RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TBC1D13Q9NVG8 400 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 KCNJ14Q9UNX9 436 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 PCDHB2Q9Y5E7 798 aa10.27□□□□□ -0.77
CIITA-208ENST00000572665 ARID2Q68CP9 1835 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SLC37A4O43826 429 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 PFKFB2O60825 505 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 CLASP2O75122 1294 aaKnown RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 CSDE1O75534 798 aaKnown RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 OFD1O75665 1012 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 STBD1O95210 358 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SRGAP2CP0DJJ0 459 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 MRE11P49959 708 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 CYP27A1Q02318 531 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 RSPO4Q2I0M5 234 aaPredicted RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 XKR9Q5GH70 373 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SFRP5Q5T4F7 317 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 PLA2G4FQ68DD2 849 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 NCAPH2Q6IBW4 605 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 KIAA1841Q6NSI8 718 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 NOTUMQ6P988 496 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SYCE2Q6PIF2 218 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 CABP7Q86V35 215 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 TDRD5Q8NAT2 981 aaKnown RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 PRPF31Q8WWY3 499 aaKnown RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 SH2D3AQ9BRG2 576 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 LXNQ9BS40 222 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 NRDE2Q9H7Z3 1164 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SFXN1Q9H9B4 322 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 IFT122Q9HBG6 1241 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 ORC3Q9UBD5 711 aaPredicted RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 DBR1Q9UK59 544 aaKnown RBP10.26□□□□□ -0.77
CIITA-208ENST00000572665 VAV3Q9UKW4 847 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 PCDHA12Q9UN75 941 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 SORCS3Q9UPU3 1222 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 FAN1Q9Y2M0 1017 aa10.26□□□□□ -0.77
CIITA-208ENST00000572665 TMEM150BA6NC51 233 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 NT5C1B-RDH14C9J2C7 533 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 GSC2O15499 205 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 SUSD5O60279 629 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 GALTP07902 379 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 ITGA4P13612 1032 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 FSTP19883 344 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 RBM10P98175 930 aaKnown RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 POU5F1BQ06416 359 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 LAMTOR4Q0VGL1 99 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 EMC2Q15006 297 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 NPY5RQ15761 445 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 NKAPLQ5M9Q1 402 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 C22orf34Q6ZV56 151 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 MRPL10Q7Z7H8 261 aaKnown RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 FERMT3Q86UX7 667 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 KSR1Q8IVT5 923 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 RNF149Q8NC42 400 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 ST13P5Q8NFI4 369 aaPredicted RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 LPPQ93052 612 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 AIFM3Q96NN9 605 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 APOL5Q9BWW9 433 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 TRIM6Q9C030 488 aaPredicted RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 GBP3Q9H0R5 595 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 MRPL17Q9NRX2 175 aaKnown RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 ANKEF1Q9NU02 776 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 SUSD2Q9UGT4 822 aa10.25□□□□□ -0.77
CIITA-208ENST00000572665 TDRD15B5MCY1 1934 aaKnown RBP10.25□□□□□ -0.77
CIITA-208ENST00000572665 MUC6Q6W4X9 2439 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 TECTAO75443 2155 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 MSTNO14793 375 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 CBFA2T2O43439 604 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 IGLV1-40P01703 118 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 URODP06132 367 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 NCLP19338 710 aaKnown RBP10.24□□□□□ -0.77
CIITA-208ENST00000572665 KLRC2P26717 231 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 NPEPPSP55786 919 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 IFRD2Q12894 506 aaPredicted RBP10.24□□□□□ -0.77
CIITA-208ENST00000572665 AUHQ13825 339 aaKnown RBP10.24□□□□□ -0.77
CIITA-208ENST00000572665 SAFBQ15424 915 aaKnown RBP eCLIP10.24□□□□□ -0.77
CIITA-208ENST00000572665 CALCRLQ16602 461 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 RARS2Q5T160 578 aaKnown RBP10.24□□□□□ -0.77
CIITA-208ENST00000572665 CYP26C1Q6V0L0 522 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 TPH2Q8IWU9 490 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 ZDHHC14Q8IZN3 488 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 TMEM143Q96AN5 459 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 DYDC2Q96IM9 177 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 KLHL25Q9H0H3 589 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 TPCN1Q9ULQ1 816 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 ZNF318Q5VUA4 2279 aa10.24□□□□□ -0.77
CIITA-208ENST00000572665 KMT2EQ8IZD2 1858 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 INO80B-WBP1J3KQ70 363 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 SHOXO15266 292 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 NEMFO60524 1076 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 LRRN2O75325 713 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 LYPLA2O95372 231 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 EPHX1P07099 455 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 XRCC6P12956 609 aaKnown RBP eCLIP10.23□□□□□ -0.77
CIITA-208ENST00000572665 KIR3DL1P43629 444 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 SLC11A1P49279 550 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 ZNF143P52747 638 aaPredicted RBP10.23□□□□□ -0.77
CIITA-208ENST00000572665 CYP4A11Q02928 519 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 CREMQ03060 361 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 LONRF3Q496Y0 759 aa10.23□□□□□ -0.77
CIITA-208ENST00000572665 ANKRD39Q53RE8 183 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms