RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 VGLL4Q14135 290 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 ZNF268Q14587 947 aaPredicted RBP23.95■■□□□ 1.42
VPS53-211ENST00000571805 ATF7IP2Q5U623 682 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 EEF1DP3Q658K8 133 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 BBS12Q6ZW61 710 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 RHPN2Q8IUC4 686 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 ANKLE1Q8NAG6 615 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 ANKRD36BP1Q96IX9 119 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 KLHL14Q9P2G3 628 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 SLC24A2Q9UI40 661 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 AGTPBP1Q9UPW5 1226 aa23.95■■□□□ 1.42
VPS53-211ENST00000571805 POLR2AP24928 1970 aaKnown RBP23.95■■□□□ 1.42
VPS53-211ENST00000571805 CST8O60676 142 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 KRT7P08729 469 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 CD19P15391 556 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 GSCP56915 257 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 PDE4CQ08493 712 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PCGF5Q86SE9 256 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 CDR2LQ86X02 465 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 ECHDC2Q86YB7 292 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 CNKSR2Q8WXI2 1034 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PAIP2Q9BPZ3 127 aaKnown RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 BCO2Q9BYV7 579 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 SENP1Q9P0U3 644 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 SIX4Q9UIU6 781 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 GRID1Q9ULK0 1009 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 SRCAPQ6ZRS2 3230 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 CLUHO75153 1309 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 GOLGA8MH3BSY2 632 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 GJB1P08034 283 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 KRT15P19012 456 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 RAD23BP54727 409 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PSMC1P62191 440 aaKnown RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 ANKRD22Q5VYY1 191 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 RGS9BPQ6ZS82 235 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 FAM47EQ6ZV65 393 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PLPPR4Q7Z2D5 763 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PNMA8AQ86V59 439 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 TMEM192Q8IY95 271 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 CPT1BQ92523 772 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 ZNF668Q96K58 619 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 CPXM1Q96SM3 734 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 FRMD8P1Q9BZ68 369 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 PPCSQ9HAB8 311 aa23.94■■□□□ 1.42
VPS53-211ENST00000571805 PPP1R1BQ9UD71 204 aaPredicted RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 SMG5Q9UPR3 1016 aaKnown RBP23.94■■□□□ 1.42
VPS53-211ENST00000571805 MED7O43513 233 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 RPA3P35244 121 aaPredicted RBP23.93■■□□□ 1.42
VPS53-211ENST00000571805 CTCFP49711 727 aaPredicted RBP23.93■■□□□ 1.42
VPS53-211ENST00000571805 CDH8P55286 799 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 HIF1AQ16665 826 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 EFHC2Q5JST6 749 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 XYLT1Q86Y38 959 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 ANKMY2Q8IV38 441 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 PPIL6Q8IXY8 311 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 EXOC8Q8IYI6 725 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 C4orf33Q8N1A6 199 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 NAT8LQ8N9F0 302 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 SDCBP2Q9H190 292 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 GPRC5DQ9NZD1 345 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 BAIAP2L1Q9UHR4 511 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 RABGEF1Q9UJ41 708 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 STARD13Q9Y3M8 1113 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 A0A1W2PPM1 405 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 CD48P09326 243 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 SPARCL1Q14515 664 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 HADHQ16836 314 aaKnown RBP23.93■■□□□ 1.42
VPS53-211ENST00000571805 MSS51Q4VC12 460 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 CELF3Q5SZQ8 465 aaKnown RBP23.93■■□□□ 1.42
VPS53-211ENST00000571805 ASRGL1Q7L266 308 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 TTC13Q8NBP0 860 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 TRAPPC12Q8WVT3 735 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 SMC6Q96SB8 1091 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 PHACTR1Q9C0D0 580 aa23.93■■□□□ 1.42
VPS53-211ENST00000571805 ZMYND8Q9ULU4 1186 aaPredicted RBP23.93■■□□□ 1.42
VPS53-211ENST00000571805 IGF2BP3O00425 579 aaKnown RBP eCLIP23.92■■□□□ 1.42
VPS53-211ENST00000571805 TYROBPO43914 113 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 SLC8A1P32418 973 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 CCDC15Q0P6D6 951 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 FNBP1LQ5T0N5 605 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 TMEM130Q8N3G9 435 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 EMC1Q8N766 993 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 ARHGEF3Q9NR81 526 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 PSMC3IPQ9P2W1 217 aaPredicted RBP23.92■■□□□ 1.42
VPS53-211ENST00000571805 ERBB2P04626 1255 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 CXCL8P10145 99 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 RPL22P35268 128 aaKnown RBP23.92■■□□□ 1.42
VPS53-211ENST00000571805 MYO1EQ12965 1108 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 DNAJC3Q13217 504 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 CEP57Q86XR8 500 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 SPOCK2Q92563 424 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 FGD4Q96M96 766 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 CDT1Q9H211 546 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 MINDY3Q9H8M7 445 aa23.92■■□□□ 1.42
VPS53-211ENST00000571805 INO80B-WBP1J3KQ70 363 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 KRT19P08727 400 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 ORC1Q13415 861 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 SLC1A5Q15758 541 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 PDK4Q16654 411 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 ZNF667Q5HYK9 610 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms