RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRIM25Q14258 630 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 SEMA3AQ14563 771 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 LASP1Q14847 261 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 ADIPOQQ15848 244 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CNGA2Q16280 664 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TIGD6Q17RP2 521 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 UAP1L1Q3KQV9 507 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 NRN1LQ496H8 165 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TTC31Q49AM3 519 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 SLC9C1Q4G0N8 1177 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CTXN3Q4LDR2 81 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ZBTB41Q5SVQ8 909 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CFAP58Q5T655 872 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TAF2Q6P1X5 1199 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CNSTQ6PJW8 725 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 HHIPL2Q6UWX4 724 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 HFE2Q6ZVN8 426 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 TMTC3Q6ZXV5 915 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 RAPH1Q70E73 1250 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ZNF765Q7L2R6 523 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 MTDHQ86UE4 582 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 TSPYL5Q86VY4 417 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 CXorf67Q86X51 503 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 NBPF5PQ86XG9 351 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 IQCA1Q86XH1 822 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CCDC144CPQ8IYA2 1237 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 OR8H3Q8N146 312 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ARMC10Q8N2F6 343 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CISD2Q8N5K1 135 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 TTLL6Q8N841 843 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ATP11CQ8NB49 1132 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 RCBTB1Q8NDN9 531 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 AUTS2Q8WXX7 1259 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ZNF845Q96IR2 970 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 CCDC74BQ96LY2 380 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ACAP3Q96P50 834 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 UBL7Q96S82 380 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 DPH2Q9BQC3 489 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 WDR18Q9BV38 432 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 EDEM3Q9BZQ6 932 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 GBP3Q9H0R5 595 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 QRSL1Q9H0R6 528 aaKnown RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 ST6GALNAC4Q9H4F1 302 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 BRF2Q9HAW0 419 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 GPRC5CQ9NQ84 441 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CCDC177Q9NQR7 707 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 PRDM5Q9NQX1 630 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 DIAPH3Q9NSV4 1193 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 LRFN1Q9P244 771 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CPNE7Q9UBL6 633 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ZHX1Q9UKY1 873 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 EDARQ9UNE0 448 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 ST14Q9Y5Y6 855 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CSADQ9Y600 493 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 CYP46A1Q9Y6A2 500 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.31□□□□□ -1.88
VPS35-209ENST00000568642 ASPMQ8IZT6 3477 aa3.31□□□□□ -1.88
VPS35-209ENST00000568642 LRRC37A2A6NM11 1700 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SPTAN1Q13813 2472 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 COL15A1P39059 1388 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 BPTFQ12830 3046 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PRSS38A1L453 326 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 HMX2A2RU54 273 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SH2B2O14492 632 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 KIAA0355O15063 1070 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SPTLC2O15270 562 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 ADAM20O43506 726 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CLEC3AO75596 197 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 STARD3NLO95772 234 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 APOA4P06727 396 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MYCLP12524 364 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 GABRB3P28472 473 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MLH1P40692 756 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 HADHAP40939 763 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 HNF4AP41235 474 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CTSKP43235 329 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 KCNJ6P48051 423 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 FLT3LGP49771 235 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 HK3P52790 923 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MRPS9P82933 396 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 CREB5Q02930 508 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PPP3CAQ08209 521 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 TFCP2Q12800 502 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 TUSC3Q13454 348 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SMAD4Q13485 552 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 TRPC3Q13507 836 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CUL4BQ13620 913 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 RAB30Q15771 203 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 KYNUQ16719 465 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 ARHGAP44Q17R89 818 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 INF2Q27J81 1249 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 DUSP28Q4G0W2 176 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PPM1JQ5JR12 505 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MAP3K21Q5TCX8 1036 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 WDR73Q6P4I2 378 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 BORAQ6PGQ7 559 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 POMZP3Q6PJE2 187 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SLC2A7Q6PXP3 512 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 FRMD7Q6ZUT3 714 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms