RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CYP1A2P05177 515 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 PTP4A2Q12974 167 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 LIN9Q5TKA1 542 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 FAM171A1Q5VUB5 890 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 ERICH1Q86X53 443 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 RHOT2Q8IXI1 618 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 ALS2CR12Q96Q35 445 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 LBHD1Q9BQE6 289 aaPredicted RBP32.37■■■□□ 2.77
CTCF-203ENST00000566078 CTTNBP2NLQ9P2B4 639 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 CHORDC1Q9UHD1 332 aaPredicted RBP32.37■■■□□ 2.77
CTCF-203ENST00000566078 CALB1P05937 261 aa32.36■■■□□ 2.77
CTCF-203ENST00000566078 ELAVL2Q12926 359 aaKnown RBP32.36■■■□□ 2.77
CTCF-203ENST00000566078 IFI16Q16666 785 aaKnown RBP32.36■■■□□ 2.77
CTCF-203ENST00000566078 PKDCCQ504Y2 493 aa32.36■■■□□ 2.77
CTCF-203ENST00000566078 INTS6LQ5JSJ4 861 aaKnown RBP32.36■■■□□ 2.77
CTCF-203ENST00000566078 OR10T2Q8NGX3 314 aa32.36■■■□□ 2.77
CTCF-203ENST00000566078 MRPL42Q9Y6G3 142 aaKnown RBP32.36■■■□□ 2.77
CTCF-203ENST00000566078 PATJQ8NI35 1801 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 MYBPHLA2RUH7 354 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 RRM1P23921 792 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 PDCLQ13371 301 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 PTPN20Q4JDL3 420 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 PHLDB2Q86SQ0 1253 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 MSANTD4Q8NCY6 345 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 TRIM58Q8NG06 486 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 HNRNPABQ99729 332 aaKnown RBP32.35■■■□□ 2.77
CTCF-203ENST00000566078 MED10Q9BTT4 135 aa32.35■■■□□ 2.77
CTCF-203ENST00000566078 AVENQ9NQS1 362 aaPredicted RBP32.35■■■□□ 2.77
CTCF-203ENST00000566078 FANCGO15287 622 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 BCAT1P54687 386 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 LLGL2Q6P1M3 1020 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 CEP57Q86XR8 500 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 FUKQ8N0W3 1084 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 ANKRD52Q8NB46 1076 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 HERVK_113Q902F9 699 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 ZNF558Q96NG5 402 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 NUP85Q9BW27 656 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 COG5Q9UP83 839 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 GBF1Q92538 1859 aa32.34■■■□□ 2.77
CTCF-203ENST00000566078 GJB5O95377 273 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 SETSIPP0DME0 302 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 CASQ1P31415 396 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 TSPY1Q01534 308 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 BST2Q10589 180 aaKnown RBP32.33■■■□□ 2.77
CTCF-203ENST00000566078 VARS2Q5ST30 1063 aaKnown RBP32.33■■■□□ 2.77
CTCF-203ENST00000566078 KCNT2Q6UVM3 1135 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 MYCBPAPQ8TBZ2 947 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 CPXM1Q96SM3 734 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 CLDN5O00501 218 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 OAZ2O95190 189 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 LAG3P18627 525 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 FGFR3P22607 806 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 CDR1P51861 262 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 TCEAL1Q15170 157 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 CYP4A22Q5TCH4 519 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 PDZRN4Q6ZMN7 1036 aaPredicted RBP32.33■■■□□ 2.77
CTCF-203ENST00000566078 TPCN2Q8NHX9 752 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 PCED1BQ96HM7 432 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 B3GALT6Q96L58 329 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 TMEM209Q96SK2 561 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 B3GNT5Q9BYG0 378 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 SYNCQ9H7C4 482 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 UVRAGQ9P2Y5 699 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 PCDHGC5Q9Y5F6 944 aa32.33■■■□□ 2.77
CTCF-203ENST00000566078 PALMO75781 387 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 PDE4CQ08493 712 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 KIF18AQ8NI77 898 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 ZNF564Q8TBZ8 553 aaPredicted RBP32.32■■■□□ 2.76
CTCF-203ENST00000566078 MYLPFQ96A32 169 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 IGSF21Q96ID5 467 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 ZBED2Q9BTP6 218 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 ST7Q9NRC1 585 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 TJP2Q9UDY2 1190 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 SLC4A7Q9Y6M7 1214 aa32.32■■■□□ 2.76
CTCF-203ENST00000566078 GRID2IPA4D2P6 1211 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 TULP2O00295 520 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 HTRA4P83105 476 aaPredicted RBP32.31■■■□□ 2.76
CTCF-203ENST00000566078 PLCB3Q01970 1234 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 FAM171BQ6P995 826 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 PAQR9Q6ZVX9 377 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 COLGALT1Q8NBJ5 622 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 IPO4Q8TEX9 1081 aaKnown RBP32.31■■■□□ 2.76
CTCF-203ENST00000566078 SLC9A7Q96T83 725 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 PKMYT1Q99640 499 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 STRIP2Q9ULQ0 834 aa32.31■■■□□ 2.76
CTCF-203ENST00000566078 ERBB2P04626 1255 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 RGS7P49802 495 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 HADHBP55084 474 aaKnown RBP32.3■■■□□ 2.76
CTCF-203ENST00000566078 FAM35AQ86V20 835 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 C18orf8Q96DM3 657 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 KRT82Q9NSB4 513 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 SCINQ9Y6U3 715 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 PLXNA4Q9HCM2 1894 aa32.3■■■□□ 2.76
CTCF-203ENST00000566078 MTA2O94776 668 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 ZNF280DQ6N043 979 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 PMF1Q6P1K2 205 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 SLC35F5Q8WV83 523 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 DUSP16Q9BY84 665 aa32.29■■■□□ 2.76
CTCF-203ENST00000566078 MTIF3Q9H2K0 278 aaKnown RBP32.29■■■□□ 2.76
CTCF-203ENST00000566078 CTXN3Q4LDR2 81 aa32.29■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms