RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MRPL45Q9BRJ2 306 aaKnown RBP14.3□□□□□ -0.12
CLK3-216ENST00000564468 LRRC3Q9BY71 257 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 MFSD1Q9H3U5 465 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 SLITRK6Q9H5Y7 841 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 METTL14Q9HCE5 456 aaKnown RBP14.3□□□□□ -0.12
CLK3-216ENST00000564468 ZFP14Q9HCL3 533 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 KIAA1468Q9P260 1216 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 UXTQ9UBK9 157 aaPredicted RBP14.3□□□□□ -0.12
CLK3-216ENST00000564468 ANAPC1Q9H1A4 1944 aa14.3□□□□□ -0.12
CLK3-216ENST00000564468 MYO15AQ9UKN7 3530 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 A0A1W2PRU2 124 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 ASS1P00966 412 aaKnown RBP14.29□□□□□ -0.12
CLK3-216ENST00000564468 TRIM49P0CI25 452 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 TRIM49CP0CI26 452 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 PTPN1P18031 435 aaKnown RBP14.29□□□□□ -0.12
CLK3-216ENST00000564468 CYP2F1P24903 491 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 GABRR2P28476 465 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 PFKPQ01813 784 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 CYP27A1Q02318 531 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 TEAD2Q15562 447 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 C1orf220Q5T0J3 134 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 TCERG1LQ5VWI1 586 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 SHKBP1Q8TBC3 707 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 GIPC2Q8TF65 315 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 FAXDC2Q96IV6 333 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 LPIN3Q9BQK8 851 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 ATXN3LQ9H3M9 355 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 MMRN2Q9H8L6 949 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 SLC2A4RGQ9NR83 387 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 FAM86C1Q9NVL1 165 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 EHD2Q9NZN4 543 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 ARMCX3Q9UH62 379 aaPredicted RBP14.29□□□□□ -0.12
CLK3-216ENST00000564468 ATP8B3O60423 1300 aa14.29□□□□□ -0.12
CLK3-216ENST00000564468 SOBPA7XYQ1 873 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 H0Y858 1186 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 GOLGA6L22H0YM25 854 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 BIN1O00499 593 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 TRIM66O15016 1216 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 ATP2C2O75185 946 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 MOSPD3O75425 235 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 FGFR1OPO95684 399 aaKnown RBP14.28□□□□□ -0.12
CLK3-216ENST00000564468 ANXA13P27216 316 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 MXI1P50539 228 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 VCPP55072 806 aaKnown RBP14.28□□□□□ -0.12
CLK3-216ENST00000564468 PSMC1P62191 440 aaKnown RBP14.28□□□□□ -0.12
CLK3-216ENST00000564468 PPP3CAQ08209 521 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 DDR2Q16832 855 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 MDH1BQ5I0G3 518 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 KLHL10Q6JEL2 608 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 GAREM2Q75VX8 874 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 FRMD5Q7Z6J6 570 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 FILIP1Q7Z7B0 1213 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 UNC93AQ86WB7 457 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 SCN4BQ8IWT1 228 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 B3GALNT2Q8NCR0 500 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 NELFBQ8WX92 580 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 SMARCD2Q92925 531 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 MYLPFQ96A32 169 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 EEF2KMTQ96G04 330 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 SPATA17Q96L03 361 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 ASB16Q96NS5 453 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 IPO9Q96P70 1041 aaKnown RBP14.28□□□□□ -0.12
CLK3-216ENST00000564468 SMOC2Q9H3U7 446 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 SMYD3Q9H7B4 428 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 CYP3A43Q9HB55 503 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 TRPV4Q9HBA0 871 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 CRTAC1Q9NQ79 661 aa14.28□□□□□ -0.12
CLK3-216ENST00000564468 MIA3Q5JRA6 1907 aa14.27□□□□□ -0.12
CLK3-216ENST00000564468 TRIM49BA6NDI0 452 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 PPP1R3GB7ZBB8 358 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 PROB1E7EW31 1015 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 GALR2O43603 387 aaPredicted RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 HCRTO43612 131 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 NARSO43776 548 aaKnown RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 GNA14O95837 355 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 CFHP08603 1231 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 CD44P16070 742 aaKnown RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 GJA1P17302 382 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 RFX1P22670 979 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 DDX6P26196 483 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLK3-216ENST00000564468 GRIK1P39086 918 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 CDR1P51861 262 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 PMS1P54277 932 aaKnown RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 CDH8P55286 799 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 NOP14P78316 857 aaKnown RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 PAK1Q13153 545 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 CAMK4Q16566 473 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 DCAF17Q5H9S7 520 aaPredicted RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 WDR44Q5JSH3 913 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 FAM78AQ5JUQ0 283 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 SCARA5Q6ZMJ2 495 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 TTC39CQ8N584 583 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 FBXL13Q8NEE6 735 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 ZSCAN18Q8TBC5 510 aaPredicted RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 DEPDC1BQ8WUY9 529 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 TRMT2BQ96GJ1 504 aaKnown RBP14.27□□□□□ -0.13
CLK3-216ENST00000564468 PCED1BQ96HM7 432 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 SHDQ96IW2 340 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 KXD1Q9BQD3 176 aa14.27□□□□□ -0.13
CLK3-216ENST00000564468 ELOVL4Q9GZR5 314 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms