RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TXNDC11Q6PKC3 985 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 ERMP1Q7Z2K6 904 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 HSCBQ8IWL3 235 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 SYNPOQ8N3V7 929 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 NOC3LQ8WTT2 800 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 KBTBD7Q8WVZ9 684 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 ZFYVE19Q96K21 471 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 GTSE1Q9NYZ3 720 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 RCOR1Q9UKL0 485 aa18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 R3HCC1Q9Y3T6 440 aaKnown RBP18.46■□□□□ 0.55
VPS9D1-203ENST00000563798 DENND4CQ5VZ89 1909 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 WARSP23381 471 aaKnown RBP18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 AVPR1AP37288 418 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 ID4P47928 161 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 CXCL12P48061 93 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 CCINQ13939 588 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 PSMD6Q15008 389 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 DDR2Q16832 855 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 ITPRIPL2Q3MIP1 535 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 LMBRD2Q68DH5 695 aaPredicted RBP18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 TRAPPC11Q7Z392 1133 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 SPATA2LQ8IUW3 424 aaPredicted RBP18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 MAB21L3Q8N8X9 362 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 MRPS31Q92665 395 aaKnown RBP18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 USP13Q92995 863 aaPredicted RBP18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 TDP1Q9NUW8 608 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 FAM13BQ9NYF5 915 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 CFAP45Q9UL16 551 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 CDH9Q9ULB4 789 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 GPR179Q6PRD1 2367 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 DCHS1Q96JQ0 3298 aa18.45■□□□□ 0.54
VPS9D1-203ENST00000563798 TACC1O75410 805 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 TADA3O75528 432 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 STAU1O95793 577 aaKnown RBP18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 TNK2Q07912 1038 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 MAPRE1Q15691 268 aaKnown RBP18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 TXNDC8Q6A555 127 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 VSTM1Q6UX27 236 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 C4orf50Q6ZRC1 276 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 HS2ST1Q7LGA3 356 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 GPR161Q8N6U8 529 aaKnown RBP18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 XXYLT1Q8NBI6 393 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 TMEM174Q8WUU8 243 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 SPATA17Q96L03 361 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 CGRRF1Q99675 332 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 SMG9Q9H0W8 520 aaKnown RBP18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 GZF1Q9H116 711 aaPredicted RBP18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 GKN1Q9NS71 199 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 CCL26Q9Y258 94 aa18.44■□□□□ 0.54
VPS9D1-203ENST00000563798 HCRTO43612 131 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 LMO2P25791 158 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 HOXA6P31267 233 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 ME1P48163 572 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 SATB1Q01826 763 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 CYP24A1Q07973 514 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 CCDC142Q17RM4 750 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 SDHAF4Q5VUM1 108 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 FOXD4L5Q5VV16 416 aaPredicted RBP18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 KIAA2013Q8IYS2 634 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 DCLK2Q8N568 766 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 FOXD4L4Q8WXT5 416 aaPredicted RBP18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 SYT15Q9BQS2 421 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 CRTAC1Q9NQ79 661 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 HPS4Q9NQG7 708 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 MAGED2Q9UNF1 606 aaPredicted RBP18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 SMG5Q9UPR3 1016 aaKnown RBP18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 OBSL1O75147 1896 aa18.43■□□□□ 0.54
VPS9D1-203ENST00000563798 TULP1O00294 542 aaPredicted RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 ATP2C2O75185 946 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 CST3P01034 146 aaPredicted RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 HSP90AA1P07900 732 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 SLFN14P0C7P3 912 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 CASP1P29466 404 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 CUL4BQ13620 913 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 RUNX3Q13761 415 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 KNOP1Q1ED39 458 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 STKLD1Q8NE28 680 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 MYCBPAPQ8TBZ2 947 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 FNBP1Q96RU3 617 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 BLZF1Q9H2G9 400 aa18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 RBM12Q9NTZ6 932 aaKnown RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 MAGEC2Q9UBF1 373 aaPredicted RBP18.42■□□□□ 0.54
VPS9D1-203ENST00000563798 DMXL1Q9Y485 3027 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 K7ESF4 209 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 TRDMT1O14717 391 aaKnown RBP18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 CLIC2O15247 247 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 DLATP10515 647 aaKnown RBP18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 TCF3P15923 654 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 PFKLP17858 780 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 TNNI1P19237 187 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 CLDN10P78369 228 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 FAM160A1Q05DH4 1040 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 PKP1Q13835 747 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 PON2Q15165 354 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 PDGFRLQ15198 375 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 TMEM196Q5HYL7 178 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 NELFCDQ8IXH7 590 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 RDH13Q8NBN7 331 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 TTC8Q8TAM2 541 aa18.41■□□□□ 0.54
VPS9D1-203ENST00000563798 RIN3Q8TB24 985 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms