RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ADAMTS3O15072 1205 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 FGBP02675 491 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 FESP07332 822 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 CHRM5P08912 532 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 DLDP09622 509 aaKnown RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 ATXN1LP0C7T5 689 aaKnown RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 PRDX5P30044 214 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 PPIFP30405 207 aaKnown RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 LIPAP38571 399 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 LOXL3P58215 753 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 KRTAP10-7P60409 375 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 GPSM2P81274 684 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 DAZAP2Q15038 168 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 PPP1R32Q7Z5V6 425 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 ZDHHC17Q8IUH5 632 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 ABHD11Q8NFV4 315 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 NSMCE1Q8WV22 266 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 TEKT5Q96M29 485 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 MOGAT1Q96PD6 335 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 DMRTA2Q96SC8 542 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 FSD1LQ9BXM9 530 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 PDGFCQ9NRA1 345 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.51□□□□□ -1.85
VPS13C-205ENST00000558088 SERTAD3Q9UJW9 196 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 AFG3L2Q9Y4W6 797 aa3.51□□□□□ -1.85
VPS13C-205ENST00000558088 CACNA1IQ9P0X4 2223 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 IGKV2D-30A0A075B6S6 120 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 POC1B-GALNT4F8VUJ3 575 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SLC16A6O15403 523 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 TMEM191BP0C7N4 346 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SFPQP23246 707 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 PXNP49023 591 aaPredicted RBP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 FXR1P51114 621 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 ADKP55263 362 aaKnown RBP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 ZNF268Q14587 947 aaPredicted RBP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 ABCB5Q2M3G0 1257 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 INAVAQ3KP66 663 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 LONRF3Q496Y0 759 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 ARHGAP40Q5TG30 622 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SYDE2Q5VT97 1194 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SHC4Q6S5L8 630 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 MTHFD1LQ6UB35 978 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SERPINA13PQ6UXR4 307 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 MIER2Q8N344 545 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 GALNT4Q8N4A0 578 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 FAM46DQ8NEK8 389 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SPATA3Q8NHX4 192 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 XAGE5Q8WWM1 108 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SLC46A1Q96NT5 459 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 CAMKK2Q96RR4 588 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 PTDSS2Q9BVG9 487 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 C1orf43Q9BWL3 253 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 TTYH3Q9C0H2 523 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 MRPS18AQ9NVS2 196 aaKnown RBP3.5□□□□□ -1.85
VPS13C-205ENST00000558088 TFCP2L1Q9NZI6 479 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 AGAP1Q9UPQ3 857 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHA3Q9Y5H8 950 aa3.5□□□□□ -1.85
VPS13C-205ENST00000558088 SHTN1A0MZ66 631 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 E5RJQ4 531 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 DSCR3O14972 297 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 EXOC3O60645 756 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 BCAR3O75815 825 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 PIM1P11309 404 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-205ENST00000558088 IL1R2P27930 398 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 KRT85P78386 507 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 E2F2Q14209 437 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 IQCB1Q15051 598 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 Q4G0T1 1027 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 AMOTQ4VCS5 1084 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 MIDNQ504T8 468 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 KIRREL2Q6UWL6 708 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 HEATR3Q7Z4Q2 680 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 FAM90A1Q86YD7 464 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 CBARPQ8N350 705 aaPredicted RBP3.49□□□□□ -1.85
VPS13C-205ENST00000558088 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS13C-205ENST00000558088 R3HDM4Q96D70 268 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 RITA1Q96K30 269 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 FAM167AQ96KS9 214 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 MACROD1Q9BQ69 325 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 KLHL13Q9P2N7 655 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 HESX1Q9UBX0 185 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 ABCF2Q9UG63 623 aa3.49□□□□□ -1.85
VPS13C-205ENST00000558088 A1L4Q6 167 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 FAM90A10PA6NDY2 464 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 LRRC14BA6NHZ5 514 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PRSS29PA6NIE9 313 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA12O60330 932 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 RNF8O76064 485 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PRKCBP05771 671 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 CCKARP32238 428 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 TOB1P50616 345 aaPredicted RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 ZNF134P52741 427 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 DSC2Q02487 901 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 NOGQ13253 232 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 FCRL6Q6DN72 434 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 RGS7BPQ6MZT1 257 aaPredicted RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 KIAA1161Q6NSJ0 714 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 Q6ZWC4 215 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 TERB1Q8NA31 727 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 ADAMTS15Q8TE58 950 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms