RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ECT2Q9H8V3 914 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 RPF1Q9H9Y2 349 aaKnown RBP8.83□□□□□ -1
CCDC88C-214ENST00000557507 TMLHEQ9NVH6 421 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 ZMYM5Q9UJ78 669 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 LHX6Q9UPM6 363 aa8.83□□□□□ -1
CCDC88C-214ENST00000557507 URB1O60287 2271 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 FLNBO75369 2602 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 PIGRP01833 764 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 HNRNPLP14866 589 aaKnown RBP eCLIP8.82□□□□□ -1
CCDC88C-214ENST00000557507 DHPSP49366 369 aaPredicted RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 SMTNP53814 917 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 SLC12A3P55017 1021 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 AMPD2Q01433 879 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 TMEM132DQ14C87 1099 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 CCDC142Q17RM4 750 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 EML3Q32P44 896 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 WSCD1Q658N2 575 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 CC2D1AQ6P1N0 951 aaPredicted RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 LRSAM1Q6UWE0 723 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 MON1AQ86VX9 555 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 RASSF3Q86WH2 238 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 CCDC83Q8IWF9 413 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 TTC16Q8NEE8 873 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 MDGA1Q8NFP4 955 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 FBXO18Q8NFZ0 1043 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 USP33Q8TEY7 942 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 C2orf15Q8WU43 125 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 OSCP1Q8WVF1 389 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 MRPS31Q92665 395 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 KCNN1Q92952 543 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 FAM212AQ96EL1 285 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 CNOT6LQ96LI5 555 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 PLIN2Q99541 437 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 PI4K2AQ9BTU6 479 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 RAB34Q9BZG1 259 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 DUS2Q9NX74 493 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 CPSF3Q9UKF6 684 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 KLK13Q9UKR3 277 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 NOL7Q9UMY1 257 aaKnown RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 MAGED2Q9UNF1 606 aaPredicted RBP8.82□□□□□ -1
CCDC88C-214ENST00000557507 STK24Q9Y6E0 443 aa8.82□□□□□ -1
CCDC88C-214ENST00000557507 A0A0B4J269 797 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SPAARA0A1B0GVQ0 90 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 TISP43B9A030 160 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 K7ENM7 598 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 CYB561D2O14569 222 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SEC24BO95487 1268 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 HSP90AA1P07900 732 aaKnown RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 CHRM1P11229 460 aaPredicted RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 OPRD1P41143 372 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 IFNAR2P48551 515 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 TAF6P49848 677 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 NEK4P51957 841 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SEC13P55735 322 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 FAM160A1Q05DH4 1040 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 GNL2Q13823 731 aaKnown RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 KYAT1Q16773 422 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 GAB4Q2WGN9 574 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 ZC2HC1CQ53FD0 456 aaPredicted RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 USP39Q53GS9 565 aaKnown RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 C2orf27AQ580R0 203 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 ARSHQ5FYA8 562 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 HYIQ5T013 277 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 ARMCX6Q7L4S7 300 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SFTPA1Q8IWL2 248 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 EFCAB13Q8IY85 973 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SYT2Q8N9I0 419 aaPredicted RBP8.81□□□□□ -1
CCDC88C-214ENST00000557507 LRRC15Q8TF66 581 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 RLN3Q8WXF3 142 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 PIGKQ92643 395 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 ATP2A3Q93084 1043 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 SNX21Q969T3 373 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 TSPAN18Q96SJ8 248 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 CYP2S1Q96SQ9 504 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 MSTO1Q9BUK6 570 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 CCSER1Q9C0I3 900 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 TRPC7Q9HCX4 862 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 DSEQ9UL01 958 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 NEUROG3Q9Y4Z2 214 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 PCDHB5Q9Y5E4 795 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 NUMA1Q14980 2115 aa8.81□□□□□ -1
CCDC88C-214ENST00000557507 ATXN2Q99700 1313 aaKnown RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 C2orf78A6NCI8 922 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 SOBPA7XYQ1 873 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 K7EQS6 105 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 TAF4O00268 1085 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 PRPF40AO75400 957 aaKnown RBP8.8□□□□□ -1
CCDC88C-214ENST00000557507 NOL4O94818 638 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CKMP06732 381 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 PLA2G4BP0C869 781 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CSH1P0DML2 217 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 CSH2P0DML3 217 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 PAX3P23760 479 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 PRPHP41219 470 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 PTGER3P43115 390 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 MAPK8P45983 427 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 ACOT2P49753 483 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 MESP2Q0VG99 397 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 SMARCB1Q12824 385 aa8.8□□□□□ -1
CCDC88C-214ENST00000557507 DDR2Q16832 855 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms