RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 NTPCRQ9BSD7 190 aaKnown RBP13.5□□□□□ -0.25
SHMT2-230ENST00000557427 MRPL4Q9BYD3 311 aaKnown RBP13.5□□□□□ -0.25
SHMT2-230ENST00000557427 XPO4Q9C0E2 1151 aaKnown RBP13.5□□□□□ -0.25
SHMT2-230ENST00000557427 C17orf75Q9HAS0 396 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 TMEM9BQ9NQ34 198 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 IFNKQ9P0W0 207 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 ARHGAP28Q9P2N2 729 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 KCNG1Q9UIX4 513 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 TNFSF13BQ9Y275 285 aa13.5□□□□□ -0.25
SHMT2-230ENST00000557427 NUP205Q92621 2012 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 KIF26AQ9ULI4 1882 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-230ENST00000557427 SPAARA0A1B0GVQ0 90 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 FAM13AO94988 1023 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 ELF1P32519 619 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 MATR3P43243 847 aaKnown RBP eCLIP13.49□□□□□ -0.25
SHMT2-230ENST00000557427 CLCNKBP51801 687 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 IRX4P78413 519 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 ZNF568Q3ZCX4 644 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 STXBP5Q5T5C0 1151 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 YAF2Q8IY57 180 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 CEP120Q8N960 986 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 TMEM161BQ8NDZ6 487 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 CHFRQ96EP1 664 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 REEP2Q9BRK0 252 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 MKNK1Q9BUB5 465 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 LRRC3Q9BY71 257 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 SPTLC3Q9NUV7 552 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 CACNA2D2Q9NY47 1150 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 KCND2Q9NZV8 630 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 SLC8A2Q9UPR5 921 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 ABCA7Q8IZY2 2146 aa13.49□□□□□ -0.25
SHMT2-230ENST00000557427 MEFVO15553 781 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-230ENST00000557427 MAPTP10636 758 aaKnown RBP13.48□□□□□ -0.25
SHMT2-230ENST00000557427 ZNF18P17022 549 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 ARPP19P56211 112 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 TWF1Q12792 350 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 CUL4BQ13620 913 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 KCNB1Q14721 858 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 UPP1Q16831 310 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 UAP1L1Q3KQV9 507 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 SEZ6Q53EL9 994 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 GLRA4Q5JXX5 417 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 FSTL4Q6MZW2 842 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 HAUS6Q7Z4H7 955 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 LARP4BQ92615 738 aaKnown RBP13.48□□□□□ -0.25
SHMT2-230ENST00000557427 E2F7Q96AV8 911 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 HHIPQ96QV1 700 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 CCDC94Q9BW85 323 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-230ENST00000557427 CDT1Q9H211 546 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 GOLGA2P5Q9HBQ8 144 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 PTPRHQ9HD43 1115 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 KBTBD4Q9NVX7 518 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 FANCLQ9NW38 375 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 LARSQ9P2J5 1176 aaKnown RBP13.48□□□□□ -0.25
SHMT2-230ENST00000557427 ANKFY1Q9P2R3 1169 aa13.48□□□□□ -0.25
SHMT2-230ENST00000557427 PHLPP2Q6ZVD8 1323 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 PPP1R3GB7ZBB8 358 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 KHNYNO15037 678 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 RHOBTB1O94844 696 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 RPN1P04843 607 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 YARSP54577 528 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 UBASH3AP57075 661 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 MRPL58Q14197 206 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 NOLC1Q14978 699 aaKnown RBP eCLIP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ELF2Q15723 593 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ZNF658Q5TYW1 1059 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 SPATA1Q5VX52 437 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 IQCEQ6IPM2 695 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 MPZL3Q6UWV2 235 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 DYMQ7RTS9 669 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ARID3BQ8IVW6 561 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 LRRC8AQ8IWT6 810 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 CHCHD4Q8N4Q1 142 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 CAMKK1Q8N5S9 505 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 CCDC150Q8NCX0 1101 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 CACTINQ8WUQ7 758 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 BICD1Q96G01 975 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ZNF512Q96ME7 567 aaPredicted RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ACAP3Q96P50 834 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 PPP1R10Q96QC0 940 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 TMEM209Q96SK2 561 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 GTPBP4Q9BZE4 634 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 PARVGQ9HBI0 331 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 FBRSL1Q9HCM7 1045 aaKnown RBP13.47□□□□□ -0.25
SHMT2-230ENST00000557427 ODF2LQ9ULJ1 636 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 PYCARDQ9ULZ3 195 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 INVSQ9Y283 1065 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 NFE2L3Q9Y4A8 694 aa13.47□□□□□ -0.25
SHMT2-230ENST00000557427 SMIM28A0A1B0GU29 152 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 A0A1W2PRU2 124 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 TBCAO75347 108 aaKnown RBP13.46□□□□□ -0.25
SHMT2-230ENST00000557427 SERPINC1P01008 464 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 MCF2P10911 925 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 ATP1A3P13637 1013 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 CD44P16070 742 aaKnown RBP13.46□□□□□ -0.25
SHMT2-230ENST00000557427 CASP1P29466 404 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 NMT1P30419 496 aaKnown RBP13.46□□□□□ -0.25
SHMT2-230ENST00000557427 GRM5P41594 1212 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 FAM193AP78312 1265 aa13.46□□□□□ -0.25
SHMT2-230ENST00000557427 SCAPQ12770 1279 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms