RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	KDF1	Q8NAX2	398 aa	Predicted RBP	13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	STKLD1	Q8NE28	680 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	EZH1	Q92800	747 aa	Predicted RBP	13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	MYRFL	Q96LU7	910 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZNF560	Q96MR9	790 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	FIZ1	Q96SL8	496 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	ACBD6	Q9BR61	282 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	TMEM206	Q9H813	350 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	TRPC7	Q9HCX4	862 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	ABCB6	Q9NP58	842 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	KIF3A	Q9Y496	699 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	WNT6	Q9Y6F9	365 aa		13.62	□□□□□ -0.23
SHMT2-223	ENST00000556689	USP24	Q9UPU5	2620 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	FRY	Q5TBA9	3013 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	LNP1	A1A4G5	178 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TISP43	B9A030	160 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TULP1	O00294	542 aa	Predicted RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TBCA	O75347	108 aa	Known RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	NOL4	O94818	638 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	IL18RAP	O95256	599 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	CKM	P06732	381 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZNF252P-AS1	Q0IIN9	211 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	POSTN	Q15063	836 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZNF77	Q15935	545 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	EML3	Q32P44	896 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	PMS2CL	Q68D20	193 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	EFCAB13	Q8IY85	973 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	PDCL2	Q8N4E4	241 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	FSIP1	Q8NA03	581 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TSTD1	Q8NFU3	115 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	LEO1	Q8WVC0	666 aa	Predicted RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TRMT2B	Q96GJ1	504 aa	Known RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	SLC22A12	Q96S37	553 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	LINC00597	Q9H2U6	94 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	ST6GALNAC4	Q9H4F1	302 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	TMEM9B	Q9NQ34	198 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	BLOC1S4	Q9NUP1	217 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	DDX43	Q9NXZ2	648 aa	Known RBP	13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	GTF3C4	Q9UKN8	822 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	AGAP1	Q9UPQ3	857 aa		13.61	□□□□□ -0.23
SHMT2-223	ENST00000556689	CDX4	O14627	284 aa	Predicted RBP	13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	HUS1	O60921	280 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	TADA3	O75528	432 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	HDC	P19113	662 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	CSRP1	P21291	193 aa	Known RBP	13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	IRX4	P78413	519 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	TFAM	Q00059	246 aa	Known RBP	13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	MYL7	Q01449	175 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	ZNF720	Q7Z2F6	126 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	ARL14EP	Q8N8R7	260 aa	Predicted RBP	13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	SH3RF2	Q8TEC5	729 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	USP33	Q8TEY7	942 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	LRRC15	Q8TF66	581 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	CACTIN	Q8WUQ7	758 aa	Known RBP	13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	POMGNT1	Q8WZA1	660 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	RAD54L	Q92698	747 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	GCNT4	Q9P109	453 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689	WASF3	Q9UPY6	502 aa		13.6	□□□□□ -0.23
SHMT2-223	ENST00000556689		H3BQV1	296 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689		K7EQS6	105 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	NFATC1	O95644	943 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	SPINK2	P20155	84 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	ACAT1	P24752	427 aa	Known RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	POLR2B	P30876	1174 aa	Known RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	DDIT3	P35638	169 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	SEC13	P55735	322 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	USP4	Q13107	963 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	C2orf27A	Q580R0	203 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	INTS6L	Q5JSJ4	861 aa	Known RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	CYP2U1	Q7Z449	544 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	RASSF3	Q86WH2	238 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	SPATA2L	Q8IUW3	424 aa	Predicted RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	TMEM86A	Q8N2M4	240 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	CSGALNACT2	Q8N6G5	542 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	KRI1	Q8N9T8	703 aa	Known RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	RASSF8	Q8NHQ8	419 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	ADAM33	Q9BZ11	813 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	TPSD1	Q9BZJ3	242 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	L1RE1	Q9UN81	338 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	CHD6	Q8TD26	2715 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	KIF26A	Q9ULI4	1882 aa	Predicted RBP	13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	ATG2B	Q96BY7	2078 aa		13.59	□□□□□ -0.23
SHMT2-223	ENST00000556689	C2orf78	A6NCI8	922 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	TMEM8B	A6NDV4	472 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	PATE3	B3GLJ2	98 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ALDH1A2	O94788	518 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ITGB3	P05106	788 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	TCF3	P15923	654 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	PLCG1	P19174	1290 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ADSS	P30520	456 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	LHX1	P48742	406 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	DHPS	P49366	369 aa	Predicted RBP	13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	PDE6C	P51160	858 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	KCNB1	Q14721	858 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	CRY1	Q16526	586 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	UAP1L1	Q3KQV9	507 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	CFAP221	Q4G0U5	840 aa		13.58	□□□□□ -0.24
SHMT2-223	ENST00000556689	ANO7	Q6IWH7	933 aa		13.58	□□□□□ -0.24

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