RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 DMTNQ08495 405 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 DSC1Q08554 894 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 KLHL30Q0D2K2 578 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 KCNH2Q12809 1159 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 EMC2Q15006 297 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 SLC18A3Q16572 532 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 LONRF2Q1L5Z9 754 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 N4BP2L1Q5TBK1 243 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 CCDC181Q5TID7 509 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 RINT1Q6NUQ1 792 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 ELMSAN1Q6PJG2 1045 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 PRSS55Q6UWB4 352 aaPredicted RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 ZNF410Q86VK4 478 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 SLC9A9Q8IVB4 645 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 ZNF687Q8N1G0 1237 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 SMG8Q8ND04 991 aaKnown RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 PIGOQ8TEQ8 1089 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 PSPC1Q8WXF1 523 aaKnown RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 TMEM143Q96AN5 459 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 HVCN1Q96D96 273 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 CALR3Q96L12 384 aaKnown RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 RUSC1Q9BVN2 902 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 RNF39Q9H2S5 420 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 TMEM206Q9H813 350 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 HEBP1Q9NRV9 189 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 SEMA4GQ9NTN9 838 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 TBC1D7Q9P0N9 293 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 LARSQ9P2J5 1176 aaKnown RBP11.9□□□□□ -0.5
SHMT2-216ENST00000554975 CACNG4Q9UBN1 327 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 ANGPTL2Q9UKU9 493 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 FRMD4BQ9Y2L6 1034 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 PPME1Q9Y570 386 aa11.9□□□□□ -0.5
SHMT2-216ENST00000554975 CNTNAP2Q9UHC6 1331 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 MACROD2A1Z1Q3 448 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 CES2O00748 559 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 MAPK13O15264 365 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 CCL16O15467 120 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 LYPLA2O95372 231 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ATP1A1P05023 1023 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 SRGAP2CP0DJJ0 459 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 MLH1P40692 756 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 RPS9P46781 194 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 SCNN1GP51170 649 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 POLR2FP61218 127 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 KCNMA1Q12791 1236 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 CETN1Q12798 172 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 SRSF5Q13243 272 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ASTE1Q2TB18 679 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 DCAF17Q5H9S7 520 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 LAIR1Q6GTX8 287 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 RSPO2Q6UXX9 243 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 PRR23CQ6ZRP0 262 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 C1orf186Q6ZWK4 172 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 FAM186BQ8IYM0 893 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 GOLGA6L1Q8N7Z2 621 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 GLIS3Q8NEA6 775 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 TCP11Q8WWU5 503 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 PRPF31Q8WWY3 499 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ING5Q8WYH8 240 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 EEF2KMTQ96G04 330 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 DRC1Q96MC2 740 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ZFP42Q96MM3 310 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 GAD1Q99259 594 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 EIF2AQ9BY44 585 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 INO80BQ9C086 356 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 DHX33Q9H6R0 707 aaKnown RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ANKZF1Q9H8Y5 726 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 VIPAS39Q9H9C1 493 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ANKEF1Q9NU02 776 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 HCFC1R1Q9NWW0 138 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 GCNT4Q9P109 453 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 FNIP2Q9P278 1114 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 KANSL3Q9P2N6 904 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 FBXW11Q9UKB1 542 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 INTUQ9ULD6 942 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 HES2Q9Y543 173 aa11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ZFP37Q9Y6Q3 630 aaPredicted RBP11.89□□□□□ -0.51
SHMT2-216ENST00000554975 ATG2BQ96BY7 2078 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 LAMA1P25391 3075 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 NPHP3-ACAD11A0A0J9YXS1 232 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 A0A0U1RQJ8 604 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 GRID2IPA4D2P6 1211 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 ARL5CA6NH57 179 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 NRG2O14511 850 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-216ENST00000554975 EPHB6O15197 1021 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 P4HA2O15460 535 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 RETP07949 1114 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 KRT13P13646 458 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 SCP2P22307 547 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 CACNB1Q02641 598 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-216ENST00000554975 DMWDQ09019 674 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 LAMTOR4Q0VGL1 99 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 HSP90B2PQ58FF3 399 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 RTP2Q5QGT7 225 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 TCERG1LQ5VWI1 586 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 HGSNATQ68CP4 663 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 FUT10Q6P4F1 479 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 PRR23BQ6ZRT6 265 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 MTSS1LQ765P7 747 aa11.88□□□□□ -0.51
SHMT2-216ENST00000554975 NPAS3Q8IXF0 933 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms