RNA–Protein interactions for RNA: ENST00000550857.5

PTPRB-209, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-209ENST00000550857 NFIBO00712 420 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 INPP4BO15327 924 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 ITGB3P05106 788 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 HOXB8P17481 243 aaPredicted RBP8.43□□□□□ -1.06
PTPRB-209ENST00000550857 UBA1P22314 1058 aaKnown RBP8.43□□□□□ -1.06
PTPRB-209ENST00000550857 PLA2G4AP47712 749 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 RHBDL3P58872 404 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 TPGS2Q68CL5 300 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 OR6P1Q8NGX9 317 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 HEXDCQ8WVB3 486 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 MTBPQ96DY7 904 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 CCDC3Q9BQI4 270 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 STK33Q9BYT3 514 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 WDCPQ9H6R7 721 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 CBX8Q9HC52 389 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 MAN1B1Q9UKM7 699 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 SLC39A10Q9ULF5 831 aa8.43□□□□□ -1.06
PTPRB-209ENST00000550857 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.43□□□□□ -1.06
PTPRB-209ENST00000550857 RTN2O75298 545 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ERBB2P04626 1255 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ACO1P21399 889 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CDH6P55285 790 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CDR2Q01850 454 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 RESTQ13127 1097 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TMEM164Q5U3C3 297 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 VSTM1Q6UX27 236 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 SPATA18Q8TC71 538 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 STMN2Q93045 179 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ZNF668Q96K58 619 aaPredicted RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 RABEP2Q9H5N1 569 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 HCN4Q9Y3Q4 1203 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 SETD1AO15047 1707 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 HEATR9A2RTY3 570 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 GCATO75600 419 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 FOSL2P15408 326 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 EXOSC10Q01780 885 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 POU5F1Q01860 360 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TCEA2Q15560 299 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PLA2G4FQ68DD2 849 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PTRHD1Q6GMV3 140 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TRIM67Q6ZTA4 783 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PID1Q7Z2X4 250 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 EXD1Q8NHP7 514 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ARNTL2Q8WYA1 636 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 MAML3Q96JK9 1138 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 COPS7BQ9H9Q2 264 aaPredicted RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 MRPL40Q9NQ50 206 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TADA3O75528 432 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 KRT20P35900 424 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CCR3P51677 355 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TBX4P57082 545 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CACNB2Q08289 660 aaPredicted RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PHACTR4Q8IZ21 702 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CARNMT1Q8N4J0 409 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 MCUQ8NE86 351 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 DEPDC1BQ8WUY9 529 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 TMEM161AQ9NX61 479 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PKD2L2Q9NZM6 624 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ABI3Q9P2A4 366 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 MAD2L2Q9UI95 211 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 MORC2Q9Y6X9 1032 aaPredicted RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 LGALS16A8MUM7 142 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PSMD12O00232 456 aaPredicted RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 VTNP04004 478 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ACOT2P49753 483 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ADCK2Q7Z695 626 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CATSPER3Q86XQ3 398 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CCNJLQ8IV13 435 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 OR8D1Q8WZ84 308 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 SLC5A5Q92911 643 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ZFP14Q9HCL3 533 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 DDX43Q9NXZ2 648 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 DNMT3LQ9UJW3 386 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ERVW-1Q9UQF0 538 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 EFCAB8A8MWE9 144 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CRTAMO95727 393 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ITGA9Q13797 1035 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 FAM133AQ8N9E0 248 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CXorf38Q8TB03 319 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 CXorf40AQ8TE69 158 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 ALKBH8Q96BT7 664 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 DEC1Q9P2X7 70 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 KLHL3Q9UH77 587 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 BRPF3Q9ULD4 1205 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 AAR2Q9Y312 384 aaKnown RBP8.42□□□□□ -1.06
PTPRB-209ENST00000550857 PCDHA2Q9Y5H9 948 aa8.42□□□□□ -1.06
PTPRB-209ENST00000550857 SPATA31C2B4DYI2 1134 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SAT1P21673 171 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 STX2P32856 288 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 DUSP3P51452 185 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 SRSF11Q05519 484 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 TMEM237Q96Q45 408 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 PRPF18Q99633 342 aaKnown RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 REEP2Q9BRK0 252 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 EPB41L4AQ9HCS5 686 aaPredicted RBP8.41□□□□□ -1.06
PTPRB-209ENST00000550857 AASDHPPTQ9NRN7 309 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 RSPH14Q9UHP6 348 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 MAFFQ9ULX9 164 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 A0A1W2PQC6 194 aa8.41□□□□□ -1.06
PTPRB-209ENST00000550857 CCDC189A1A4V9 331 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms