RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 OR6B2Q6IFH4 312 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CYP4F22Q6NT55 531 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 SPOCD1Q6ZMY3 1216 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 ZNF365Q70YC5 407 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 SCUBE3Q8IX30 993 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 C3orf20Q8ND61 904 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CLEC4CQ8WTT0 213 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 NDRG1Q92597 394 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 ART4Q93070 314 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 VCPIP1Q96JH7 1222 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 OSBPL7Q9BZF2 842 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CDC42EP4Q9H3Q1 356 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 MLXIPLQ9NP71 852 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.69□□□□□ -0.543e-7■■■■■ 27.8
CUX1-212ENST00000547394 TBK1Q9UHD2 729 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CREB1P16220 341 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 TFE3P19532 575 aaPredicted RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 EIF4BP23588 611 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 LMO2P25791 158 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 YWHAEP62258 255 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 GOLGA7BQ2TAP0 167 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 NETO2Q8NC67 525 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 OR6B3Q8NGW1 331 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 EMID1Q96A84 441 aaPredicted RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 ZFP42Q96MM3 310 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 SELENOSQ9BQE4 189 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 CALN1Q9BXU9 219 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 NFKBIZQ9BYH8 718 aa11.69□□□□□ -0.54
CUX1-212ENST00000547394 MTRF1LQ9UGC7 380 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.69□□□□□ -0.54
CUX1-212ENST00000547394 GNEQ9Y223 722 aaKnown RBP11.69□□□□□ -0.54
CUX1-212ENST00000547394 SPTLC1O15269 473 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 EIF3HO15372 352 aaKnown RBP eCLIP11.68□□□□□ -0.541e-7■■■□□ 16.5
CUX1-212ENST00000547394 LSM8O95777 96 aaKnown RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 PGK1P00558 417 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 ZNF865P0CJ78 1059 aaPredicted RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 CCDC130P13994 396 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 ADORA2BP29275 332 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 GPD2P43304 727 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 ATXN1P54253 815 aaKnown RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 GDF10P55107 478 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 MAP2K5Q13163 448 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 FASTKD3Q14CZ7 662 aaKnown RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 PPP2R5EQ16537 467 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 FAM187BQ17R55 369 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 PMF1Q6P1K2 205 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 SCYL2Q6P3W7 929 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 NPNTQ6UXI9 565 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 CD302Q8IX05 232 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 ARRDC4Q8NCT1 418 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 EXD1Q8NHP7 514 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 CFAP57Q96MR6 1250 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 ANAPC5Q9UJX4 755 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 PCDHGC3Q9UN70 934 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 RIPK2O43353 540 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 C6orf222P0C671 652 aaPredicted RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 LSP1P33241 339 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 YARSP54577 528 aaKnown RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 RBP5P82980 135 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 SOX4Q06945 474 aaPredicted RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 TRIM32Q13049 653 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 MTMR3Q13615 1198 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 IZUMO3Q5VZ72 239 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 IQSEC1Q6DN90 963 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 FAM183BPQ6ZVS7 135 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 C12orf50Q8NA57 414 aaPredicted RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 ATL2Q8NHH9 583 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 PEBP4Q96S96 227 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 GCOM2Q9BZD3 368 aaPredicted RBP11.68□□□□□ -0.54
CUX1-212ENST00000547394 ASB7Q9H672 318 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 CALCOCO1Q9P1Z2 691 aa11.68□□□□□ -0.54
CUX1-212ENST00000547394 A6NJR5 290 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 CST8O60676 142 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 SHOX2O60902 331 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 MIPP30301 263 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 CXCL17Q6UXB2 119 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 KDM7AQ6ZMT4 941 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 PAXIP1Q6ZW49 1069 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 TTC30AQ86WT1 665 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 MGARPQ8TDB4 240 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 GTF3C2Q8WUA4 911 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 BARX2Q9UMQ3 279 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 CITO14578 2027 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 hCG_1818297A0A087WSY0 165 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 HMGB1P1B2RPK0 211 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 E7EVH7 732 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 SGK1O00141 431 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 TRIM66O15016 1216 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 GAS8O95995 478 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 F2P00734 622 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 PFKMP08237 780 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 PECAM1P16284 738 aaPredicted RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 ACAT1P24752 427 aaKnown RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 CDKN2BP42772 138 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 ARSEP51690 589 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 SLC25A11Q02978 314 aaKnown RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 GPS1Q13098 491 aa11.67□□□□□ -0.54
CUX1-212ENST00000547394 BYSLQ13895 437 aaKnown RBP11.67□□□□□ -0.54
CUX1-212ENST00000547394 MORN1Q5T089 497 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms