RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 NPTXRO95502 500 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 F9P00740 461 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 CASP4P49662 377 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 LRRC6Q86X45 466 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 GGA3Q9NZ52 723 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 HACL1Q9UJ83 578 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 RIMBP3CA6NJZ7 1639 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 RIMBP3BA6NNM3 1639 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 RIMBP3Q9UFD9 1639 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 DYNC1LI2O43237 492 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-209ENST00000545689 ARP10275 920 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 TMEM259Q4ZIN3 620 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 DCAF6Q58WW2 860 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 ANKRD13AQ8IZ07 590 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 GANCQ8TET4 914 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 SPIRE2Q8WWL2 714 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 PXMP2Q9NR77 195 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 DUSP10Q9Y6W6 482 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 FBXO21O94952 628 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 RGS4P49798 205 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 COPAP53621 1224 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 SMTNL2Q2TAL5 461 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 LRRC71Q8N4P6 559 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 EPS8L3Q8TE67 593 aaKnown RBP13.03□□□□□ -0.32
COL4A6-209ENST00000545689 THTPAQ9BU02 230 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 COG4Q9H9E3 785 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 CASS4Q9NQ75 786 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 AAR2Q9Y312 384 aaKnown RBP13.03□□□□□ -0.32
COL4A6-209ENST00000545689 MST1RQ04912 1400 aa13.03□□□□□ -0.32
COL4A6-209ENST00000545689 TIMM44O43615 452 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 NQO1P15559 274 aaKnown RBP13.02□□□□□ -0.32
COL4A6-209ENST00000545689 AGR3Q8TD06 166 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 ANKRD27Q96NW4 1050 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 SH3GL3Q99963 347 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 AURKCQ9UQB9 309 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.32
COL4A6-209ENST00000545689 RIMS1Q86UR5 1692 aaKnown RBP13.02□□□□□ -0.32
COL4A6-209ENST00000545689 TADA2AO75478 443 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 ODC1P11926 461 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 KCNA3P22001 575 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 KRT72Q14CN4 511 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 NLRP9Q7RTR0 991 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 DNERQ8NFT8 737 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 NOD2Q9HC29 1040 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 SLC30A1Q9Y6M5 507 aa13.02□□□□□ -0.32
COL4A6-209ENST00000545689 NEMP1O14524 444 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 VIL1P09327 827 aaKnown RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 RARBP10826 455 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 CBWD1Q9BRT8 395 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 KCNQ5Q9NR82 932 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 FRMPD4Q14CM0 1322 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TRIM66O15016 1216 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 ENO3P13929 434 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TGM2P21980 687 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TNFRSF8P28908 595 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 FAM83EQ2M2I3 478 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 LRRC8BQ6P9F7 803 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 CYB5D1Q6P9G0 228 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 SMIM5Q71RC9 77 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TBC1D19Q8N5T2 526 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 ZNF669Q96BR6 464 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 OTUB1Q96FW1 271 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 LRRC10BA6NIK2 292 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 KCNA4P22459 653 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TIGD7Q6NT04 549 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TXNRD3Q86VQ6 643 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 MFN1Q8IWA4 741 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 FBXO36Q8NEA4 188 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 SLC5A5Q92911 643 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 TMA16Q96EY4 203 aaKnown RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 PNMA5Q96PV4 448 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 CNPY3Q9BT09 278 aa13.02□□□□□ -0.33
COL4A6-209ENST00000545689 CDC42EP4Q9H3Q1 356 aaKnown RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 ZC3H4Q9UPT8 1303 aaKnown RBP13.02□□□□□ -0.33
COL4A6-209ENST00000545689 SDR42E2A6NKP2 422 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 HNRNPH1P31943 449 aaKnown RBP13.01□□□□□ -0.33
COL4A6-209ENST00000545689 STX5Q13190 355 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 EPC2Q52LR7 807 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 MDH1BQ5I0G3 518 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 EME1Q96AY2 570 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 CCDC90BQ9GZT6 254 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 PCDH9Q9HC56 1237 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 POLIQ9UNA4 740 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 SHOC2Q9UQ13 582 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 GRAP2O75791 330 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 IRX1P78414 480 aaPredicted RBP13.01□□□□□ -0.33
COL4A6-209ENST00000545689 EN1Q05925 392 aaPredicted RBP13.01□□□□□ -0.33
COL4A6-209ENST00000545689 UGT3A1Q6NUS8 523 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 ATP6V0D2Q8N8Y2 350 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 MDM1Q8TC05 714 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 FAM163AQ96GL9 167 aaPredicted RBP13.01□□□□□ -0.33
COL4A6-209ENST00000545689 FAM118BQ9BPY3 351 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 ILKAPQ9H0C8 392 aaPredicted RBP13.01□□□□□ -0.33
COL4A6-209ENST00000545689 GDF3Q9NR23 364 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 PDP2Q9P2J9 529 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 BCL9O00512 1426 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 MYOM1P52179 1685 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 SLCO1B7G3V0H7 640 aa13.01□□□□□ -0.33
COL4A6-209ENST00000545689 ATP5BP06576 529 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms