RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 ITIH6Q6UXX5 1313 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 KRT5P13647 590 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 ANXA13P27216 316 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 RAP1GAPP47736 663 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 EPHB3P54753 998 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 IQCEQ6IPM2 695 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 ANKRD54Q6NXT1 300 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 RNF19BQ6ZMZ0 732 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 ACOT1Q86TX2 421 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 ARHGEF19Q8IW93 802 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 UBR7Q8N806 425 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 SMARCD1Q96GM5 515 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 PKMYT1Q99640 499 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 SIX2Q9NPC8 291 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 FAM207AQ9NSI2 230 aaPredicted RBP18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 HESX1Q9UBX0 185 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 PCDHGC5Q9Y5F6 944 aa18.61■□□□□ 0.57
CLSTN3-210ENST00000540931 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ADAM12O43184 909 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 LRRN2O75325 713 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 C8AP07357 584 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 HAPLN1P10915 354 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ACO1P21399 889 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ACAT1P24752 427 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 STAT1P42224 750 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 RAD23BP54727 409 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 CYP27A1Q02318 531 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 RAPGEF1Q13905 1077 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 MDH1BQ5I0G3 518 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ARHGAP17Q68EM7 881 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 RBBP8NLQ8NC74 664 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 CYFIP2Q96F07 1278 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 PCED1BQ96HM7 432 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 RIPOR3Q96MK2 946 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 NAP1L5Q96NT1 182 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 NECTIN4Q96NY8 510 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ARID3AQ99856 593 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 MED10Q9BTT4 135 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 NAA15Q9BXJ9 866 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 TRIM5Q9C035 493 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 EPHX3Q9H6B9 360 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 PNPLA8Q9NP80 782 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 COMMD8Q9NX08 183 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 ABI2Q9NYB9 513 aaPredicted RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 INSL5Q9Y5Q6 135 aa18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 MTCL1Q9Y4B5 1905 aaKnown RBP18.6■□□□□ 0.57
CLSTN3-210ENST00000540931 A0A1W2PQJ5 194 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 MYBPHLA2RUH7 354 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 EPCAMP16422 314 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 HOXD11P31277 338 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 SNX16P57768 344 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 POLR2FP61218 127 aaKnown RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 PLCB2Q00722 1185 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 DUSP4Q13115 394 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 TAF12Q16514 161 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 ARHGAP44Q17R89 818 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 MGAT5BQ3V5L5 792 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 LRRTM3Q86VH5 581 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 ZNF677Q86XU0 584 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 SLC4A11Q8NBS3 891 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 SLC7A14Q8TBB6 771 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 WHAMMQ8TF30 809 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 MYLPFQ96A32 169 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 SPATA17Q96L03 361 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 C8orf48Q96LL4 319 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 ZNF512Q96ME7 567 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 KREMEN1Q96MU8 473 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 PRKD2Q9BZL6 878 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 UBXN6Q9BZV1 441 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 XPO4Q9C0E2 1151 aaKnown RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 RBSNQ9H1K0 784 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 UBE2ZQ9H832 354 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 CRTAC1Q9NQ79 661 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 UXTQ9UBK9 157 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 ZMYM5Q9UJ78 669 aa18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 ARIH1Q9Y4X5 557 aaPredicted RBP18.59■□□□□ 0.57
CLSTN3-210ENST00000540931 TEX33O43247 280 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 OR4Q2P0C623 313 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 FAM200BP0CF97 657 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CSH1P0DML2 217 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CSH2P0DML3 217 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CD19P15391 556 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 USP8P40818 1118 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 MTHFRP42898 656 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNF132P52740 706 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 PSMC1P62191 440 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 DRAP1Q14919 205 aaPredicted RBP18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 CNGA2Q16280 664 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 ZNF394Q53GI3 561 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 ATAT1Q5SQI0 421 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 SPECC1LQ69YQ0 1117 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 LLGL2Q6P1M3 1020 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 EP400NLQ6ZTU2 488 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 FAM71AQ8IYT1 594 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 ATAD1Q8NBU5 361 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 VN1R2Q8NFZ6 395 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 LRFN3Q9BTN0 628 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 GANQ9H2C0 597 aa18.58■□□□□ 0.56
CLSTN3-210ENST00000540931 ADAM7Q9H2U9 754 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms