RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SETD4Q9NVD3 440 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 TMEM191CA6NGB0 347 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 ARIH2O95376 493 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 CD4P01730 458 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 ATP13A4Q4VNC1 1196 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 C1orf228Q6PIY5 440 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 CRELD2Q6UXH1 353 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SIX6OS1Q8N1H7 587 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SPATA18Q8TC71 538 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 FBF1Q8TES7 1133 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SHBGP04278 402 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 NME8Q8N427 588 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 KLC2Q9H0B6 622 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 LTBP1Q14766 1721 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 TMEM120BA0PK00 339 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SIGLEC16A6NMB1 481 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SHOX2O60902 331 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 MT-ND3P03897 115 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 EDNRBP24530 442 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 NDST1P52848 882 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 VCPP55072 806 aaKnown RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 PTP4A2Q12974 167 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 CYP1B1Q16678 543 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 KLHL38Q2WGJ6 581 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 NT5DC4Q86YG4 428 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 C12orf50Q8NA57 414 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 SEC16BQ96JE7 1060 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 TNIP3Q96KP6 325 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 GBA2Q9HCG7 927 aaPredicted RBP11.32□□□□□ -0.6
CLIP1-213ENST00000540338 TXNRD2Q9NNW7 524 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 DNPEPQ9ULA0 475 aa11.32□□□□□ -0.6
CLIP1-213ENST00000540338 LGR5O75473 907 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 PDGFRBP09619 1106 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 OTUD4Q01804 1114 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 SPARCL1Q14515 664 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 CCDC14Q49A88 953 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 BOLA3Q53S33 107 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 BSPRYQ5W0U4 402 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ZNF410Q86VK4 478 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ANKMY2Q8IV38 441 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ACTL9Q8TC94 416 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 DDX27Q96GQ7 796 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 CNPY3Q9BT09 278 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 TMEM121Q9BTD3 319 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 DDX23Q9BUQ8 820 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 FZD8Q9H461 694 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 SMYD3Q9H7B4 428 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 UBQLN1Q9UMX0 589 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 MICAL2O94851 1124 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 HMGCRP04035 888 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 TROVE2P10155 538 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 C15orf39Q6ZRI6 1047 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 BZW1Q7L1Q6 419 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ACOT1Q86TX2 421 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 SLITRK1Q96PX8 696 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 DHX35Q9H5Z1 703 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 IGKV6D-21A0A0A0MT36 114 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 APOL1O14791 398 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 CELF2O95319 508 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 CPP00450 1065 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ACO1P21399 889 aaKnown RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 IFI35P80217 286 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 ACVR2BQ13705 512 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 TAF1CQ15572 869 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 GLRA4Q5JXX5 417 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 PPIL6Q8IXY8 311 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 RIBC1Q8N443 379 aaPredicted RBP11.31□□□□□ -0.6
CLIP1-213ENST00000540338 PITPNM3Q9BZ71 974 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 SENP1Q9P0U3 644 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 USP18Q9UMW8 372 aa11.31□□□□□ -0.6
CLIP1-213ENST00000540338 CNTNAP2Q9UHC6 1331 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 SMAPO00193 183 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 MORF4L2Q15014 288 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 CNGA2Q16280 664 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 IQSEC1Q6DN90 963 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 APPL2Q8NEU8 664 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP1-213ENST00000540338 KCNH4Q9UQ05 1017 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 FOCADQ5VW36 1801 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 IQANK1A0A1B0GTG1 560 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 DNALI1O14645 258 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-213ENST00000540338 GRIN3BO60391 1043 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 LCP1P13796 627 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 DSTYKQ6XUX3 929 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 CCNYQ8ND76 341 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 PPTC7Q8NI37 304 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 RXFP2Q8WXD0 754 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 PPCSQ9HAB8 311 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 SNTG2Q9NY99 539 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 SEPT10Q9P0V9 454 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 TSPAN16Q9UKR8 245 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 PTPRJQ12913 1337 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 ARF4P18085 180 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-213ENST00000540338 CYP2B6P20813 491 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 STIP1P31948 543 aaKnown RBP11.3□□□□□ -0.6
CLIP1-213ENST00000540338 MTHFD1LQ6UB35 978 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 FAM71DQ8N9W8 422 aa11.3□□□□□ -0.6
CLIP1-213ENST00000540338 CD101Q93033 1021 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms