RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NXF3Q9H4D5 531 aaKnown RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 CNTN3Q9P232 1028 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 BARX2Q9UMQ3 279 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 PIN4Q9Y237 131 aaKnown RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 HSF2BPO75031 334 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 SYF2O95926 243 aaKnown RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 C6orf222P0C671 652 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 RARAP10276 462 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 CYBAP13498 195 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 GGCXP38435 758 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 TAS2R40P59535 323 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 ZBTB6Q15916 424 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 MFSD14CQ5VZR4 134 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 C16orf87Q6PH81 154 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 DCUN1D2Q6PH85 259 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 JAMLQ86YT9 394 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 KATNAL2Q8IYT4 538 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 BEST2Q8NFU1 509 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 ZMAT2Q96NC0 199 aaKnown RBP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 MCEEQ96PE7 176 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 ERP44Q9BS26 406 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 CXCL16Q9H2A7 254 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 MCM8Q9UJA3 840 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.19□□□□□ -0.78
CLIP1-212ENST00000540304 USTQ9Y2C2 406 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 HES2Q9Y543 173 aa10.19□□□□□ -0.78
CLIP1-212ENST00000540304 MYADML2A6NDP7 307 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 AGPSO00116 658 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 SKAP2O75563 359 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 RECQL4O94761 1208 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 MICAL2O94851 1124 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 HMGCRP04035 888 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 PTGIRP43119 386 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 PSMC4P43686 418 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 FNTAP49354 379 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 RAB27AP51159 221 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 NDST1P52848 882 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 GJA9P57773 515 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 PTPN20Q4JDL3 420 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 CYP4A22Q5TCH4 519 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 DUPD1Q68J44 220 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TAF2Q6P1X5 1199 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TTC27Q6P3X3 843 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 CCDC137Q6PK04 289 aaKnown RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 ALKAL1Q6UXT8 129 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 LRRC52Q8N7C0 313 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TRIB2Q92519 343 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 HHIPL1Q96JK4 782 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 ZIC5Q96T25 663 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 MTG1Q9BT17 334 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 DPH5Q9H2P9 285 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 VPS18Q9P253 973 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TUBGCP4Q9UGJ1 667 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 KIAA1257Q9ULG3 409 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 SCN1AP35498 2009 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 PODXLO00592 558 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TPP2P29144 1249 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 COILP38432 576 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 HSPA9P38646 679 aaKnown RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 ZNF252P-AS1Q0IIN9 211 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 PIGHQ14442 188 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 CNGA2Q16280 664 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 SGO2Q562F6 1265 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 GNASQ5JWF2 1037 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 TRIM42Q8IWZ5 723 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 HEXIM2Q96MH2 286 aaKnown RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 RUFY1Q96T51 708 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 APOL6Q9BWW8 343 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 NT5C1AQ9BXI3 368 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 ARHGAP39Q9C0H5 1083 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 NEUROG2Q9H2A3 272 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 LRRC19Q9H756 370 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 WDR35Q9P2L0 1181 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 CYTH4Q9UIA0 394 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 UBQLN1Q9UMX0 589 aaKnown RBP10.18□□□□□ -0.78
CLIP1-212ENST00000540304 FAN1Q9Y2M0 1017 aa10.18□□□□□ -0.78
CLIP1-212ENST00000540304 SCN10AQ9Y5Y9 1956 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 M0QYV0 167 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 O00370 1275 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 ALDH1A1P00352 501 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 IVLP07476 585 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 PECAM1P16284 738 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 GCKP35557 465 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 MAGEA10P43363 369 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 DRG2P55039 364 aaKnown RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 GLRA4Q5JXX5 417 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 UBXN11Q5T124 520 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 LRRC38Q5VT99 294 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CCDC50Q8IVM0 306 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 NIPA2Q8N8Q9 360 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 EXD1Q8NHP7 514 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 LRRC45Q96CN5 670 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 TRIM31Q9BZY9 425 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 UPF3AQ9H1J1 476 aaKnown RBP10.17□□□□□ -0.78
CLIP1-212ENST00000540304 SYNCQ9H7C4 482 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 RNF19AQ9NV58 838 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 GABRQQ9UN88 632 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 CASP8AP2Q9UKL3 1982 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 SIGLEC16A6NMB1 481 aa10.17□□□□□ -0.78
CLIP1-212ENST00000540304 OPA1O60313 960 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms