RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SLC35B2Q8TB61 432 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 ACTL9Q8TC94 416 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 COPS5Q92905 334 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 ASCC2Q9H1I8 757 aaPredicted RBP13.83□□□□□ -0.19
LDLR-203ENST00000535915 CDT1Q9H211 546 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 LHX5Q9H2C1 402 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 MINDY3Q9H8M7 445 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 ELP3Q9H9T3 547 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 CD248Q9HCU0 757 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 SHOC2Q9UQ13 582 aa13.83□□□□□ -0.19
LDLR-203ENST00000535915 C3orf70A6NLC5 250 aaPredicted RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 SOCS7O14512 581 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 NDC80O14777 642 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 CST8O60676 142 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 UBOX5O94941 541 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 KRT15P19012 456 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 IL1R2P27930 398 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 IL9RQ01113 521 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 OTUD4Q01804 1114 aaKnown RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 NR1H3Q13133 447 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 TRABD2AQ86V40 505 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 TMEM130Q8N3G9 435 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 CCDC63Q8NA47 563 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 MRRFQ96E11 262 aaKnown RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 CPXM1Q96SM3 734 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 C10orf88Q9H8K7 445 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 METTL5Q9NRN9 209 aaKnown RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 DICER1Q9UPY3 1922 aaKnown RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 IL18RAPO95256 599 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 RAD23BP54727 409 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 WDR78Q5VTH9 848 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 ANKMY2Q8IV38 441 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 ARFGAP1Q8N6T3 406 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 GIMAP7Q8NHV1 300 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 PRCCQ92733 491 aaPredicted RBP13.83□□□□□ -0.2
LDLR-203ENST00000535915 FGD4Q96M96 766 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 SIX4Q9UIU6 781 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 ARL2BPQ9Y2Y0 163 aa13.83□□□□□ -0.2
LDLR-203ENST00000535915 CHUKO15111 745 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 ALOX15BO15296 676 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 BANF1O75531 89 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 CNMDO75829 334 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 NFICP08651 508 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 KDELR1P24390 212 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 MBTD1Q05BQ5 628 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 HIF1AQ16665 826 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 PCGF5Q86SE9 256 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 KIAA0319LQ8IZA0 1049 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 BCO2Q9BYV7 579 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 TRABDQ9H4I3 376 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 SMARCAD1Q9H4L7 1026 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 SMYD3Q9H7B4 428 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 PCSK1NQ9UHG2 260 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 CITO14578 2027 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 A0A0G2JLL6 359 aaPredicted RBP13.82□□□□□ -0.2
LDLR-203ENST00000535915 SLC25A27O95847 323 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 ITGB3P05106 788 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 IQCF3P0C7M6 154 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 CTCFP49711 727 aaPredicted RBP13.82□□□□□ -0.2
LDLR-203ENST00000535915 GDF10P55107 478 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 IGBP1P78318 339 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 KCTD2Q14681 263 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 PKN2Q16513 984 aaKnown RBP13.82□□□□□ -0.2
LDLR-203ENST00000535915 PRRT2Q7Z6L0 340 aaPredicted RBP13.82□□□□□ -0.2
LDLR-203ENST00000535915 XYLT1Q86Y38 959 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 TDRPQ86YL5 185 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 TAB3Q8N5C8 712 aaPredicted RBP13.82□□□□□ -0.2
LDLR-203ENST00000535915 C1orf127Q8N9H9 656 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 TTC13Q8NBP0 860 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 FNIP1Q8TF40 1166 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 RSAD2Q8WXG1 361 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 SDCBP2Q9H190 292 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 KIF9Q9HAQ2 790 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 TNFSF13BQ9Y275 285 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 EFR3BQ9Y2G0 817 aa13.82□□□□□ -0.2
LDLR-203ENST00000535915 ADM5C9JUS6 153 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 HBP1O60381 514 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 CSDE1O75534 798 aaKnown RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 ERBB2P04626 1255 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 CD48P09326 243 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 TXNP10599 105 aaKnown RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 TAC1P20366 129 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 FOXN2P32314 431 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 WDR4P57081 412 aaKnown RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 ELF3P78545 371 aaPredicted RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 MYO1EQ12965 1108 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 FAM47EQ6ZV65 393 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 TBC1D1Q86TI0 1168 aaPredicted RBP13.81□□□□□ -0.2
LDLR-203ENST00000535915 RPAINQ86UA6 219 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 KCTD6Q8NC69 237 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 TWNKQ96RR1 684 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 SMC6Q96SB8 1091 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 PLCD4Q9BRC7 762 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 PITPNM3Q9BZ71 974 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 TXNRD2Q9NNW7 524 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 UBN1Q9NPG3 1134 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 WDR35Q9P2L0 1181 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 HMGXB4Q9UGU5 601 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 AGAP1Q9UPQ3 857 aa13.81□□□□□ -0.2
LDLR-203ENST00000535915 LACTBL1A8MY62 500 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms