RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FGF19O95750 216 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 CCDC192P0DO97 292 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 MYL4P12829 197 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 ERCC5P28715 1186 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-208ENST00000532560 MTMR3Q13615 1198 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 HTR4Q13639 388 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 CT47A1Q5JQC4 288 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-208ENST00000532560 WDR44Q5JSH3 913 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 VSTM1Q6UX27 236 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 UNC93AQ86WB7 457 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 FAM200AQ8TCP9 573 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 CEP295NLQ96MC4 621 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 FAM124BQ9H5Z6 455 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-208ENST00000532560 KCNK12Q9HB15 430 aa16.03■□□□□ 0.16
CPSF1-208ENST00000532560 ZNF334Q9HCZ1 680 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-208ENST00000532560 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.03■□□□□ 0.161e-15■■■■■ 136.6
CPSF1-208ENST00000532560 MAGEC2Q9UBF1 373 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-208ENST00000532560 NRG2O14511 850 aaPredicted RBP16.02■□□□□ 0.16
CPSF1-208ENST00000532560 P4HA2O15460 535 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 LRRN2O75325 713 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 MOSPD3O75425 235 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 CSH1P0DML2 217 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 CSH2P0DML3 217 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 GPR15P49685 360 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 NDST1P52848 882 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 ZXDAP98168 799 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 CYP27A1Q02318 531 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 MTSS1LQ765P7 747 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 UBALD2Q8IYN6 164 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 TTC39CQ8N584 583 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 SHKBP1Q8TBC3 707 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 GIPC2Q8TF65 315 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 EDAQ92838 391 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 C1QTNF1Q9BXJ1 281 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 ELOVL4Q9GZR5 314 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 HMGXB4Q9UGU5 601 aa16.02■□□□□ 0.16
CPSF1-208ENST00000532560 ATP8B3O60423 1300 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 TRIM66O15016 1216 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 NOL4O94818 638 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 BDNFP23560 247 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 TDGQ13569 410 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 CCDC183Q5T5S1 534 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 GAREM2Q75VX8 874 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 CRYBG2Q8N1P7 616 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 TRMT2BQ96GJ1 504 aaKnown RBP16.01■□□□□ 0.15
CPSF1-208ENST00000532560 SPATA17Q96L03 361 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 CNOT6LQ96LI5 555 aaKnown RBP16.01■□□□□ 0.15
CPSF1-208ENST00000532560 B3GNT5Q9BYG0 378 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 IL21Q9HBE4 155 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 DUSP12Q9UNI6 340 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.01■□□□□ 0.15
CPSF1-208ENST00000532560 NUMBLQ9Y6R0 609 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 MYO10Q9HD67 2058 aa16.01■□□□□ 0.15
CPSF1-208ENST00000532560 A0A1W2PRU2 124 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 GOLGA6L3A6NEY3 463 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 CILPO75339 1184 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 AFPP02771 609 aaKnown RBP16■□□□□ 0.15
CPSF1-208ENST00000532560 HMGA1P17096 107 aaKnown RBP16■□□□□ 0.15
CPSF1-208ENST00000532560 TRIM21P19474 475 aaKnown RBP16■□□□□ 0.15
CPSF1-208ENST00000532560 GABRR2P28476 465 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 CDC25CP30307 473 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 CETN1Q12798 172 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 KCNH2Q12809 1159 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 TEAD2Q15562 447 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 TAF12Q16514 161 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 DDR2Q16832 855 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 SDHAF4Q5VUM1 108 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 POTEHQ6S545 545 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 PARM1Q6UWI2 310 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 ACOT1Q86TX2 421 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 FAM35AQ86V20 835 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 IRF2BP1Q8IU81 584 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 SCN4BQ8IWT1 228 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 GPR152Q8TDT2 470 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 WHAMMQ8TF30 809 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 FGF14Q92915 247 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 MCRS1Q96EZ8 462 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 MYRFLQ96LU7 910 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 GCNAQ96QF7 691 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 ARID3AQ99856 593 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 ZNF518BQ9C0D4 1074 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 GPR88Q9GZN0 384 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 THAP9Q9H5L6 903 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 C11orf16Q9NQ32 467 aa16■□□□□ 0.15
CPSF1-208ENST00000532560 SLC38A8A6NNN8 435 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 GPR37L1O60883 481 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 GJA1P17302 382 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 CD58P19256 250 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 ANXA13P27216 316 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 GRIK1P39086 918 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 SIGLEC14Q08ET2 396 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 ORC1Q13415 861 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 TPD52L1Q16890 204 aaPredicted RBP15.99■□□□□ 0.15
CPSF1-208ENST00000532560 RSAD2Q8WXG1 361 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 TATDN2Q93075 761 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 SMARCD1Q96GM5 515 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 C8orf48Q96LL4 319 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 ASB16Q96NS5 453 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 TWNKQ96RR1 684 aa15.99■□□□□ 0.15
CPSF1-208ENST00000532560 NT5C1AQ9BXI3 368 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms