RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 NFE2Q16621 373 aaPredicted RBP6.17□□□□□ -1.42
CD44-231ENST00000531110 NRN1LQ496H8 165 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 CCDC14Q49A88 953 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 BOLA3Q53S33 107 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 RNF168Q8IYW5 571 aaPredicted RBP6.17□□□□□ -1.42
CD44-231ENST00000531110 ZGPATQ8N5A5 531 aaKnown RBP6.17□□□□□ -1.42
CD44-231ENST00000531110 NLGN4YQ8NFZ3 816 aaPredicted RBP6.17□□□□□ -1.42
CD44-231ENST00000531110 NEK9Q8TD19 979 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 PMM1Q92871 262 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 THOC1Q96FV9 657 aaKnown RBP6.17□□□□□ -1.42
CD44-231ENST00000531110 SLC46A2Q9BY10 475 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 KRTAP9-3Q9BYQ3 159 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 NACA2Q9H009 215 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 SPON1Q9HCB6 807 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 IP6K2Q9UHH9 426 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 SLC23A1Q9UHI7 598 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 MAFFQ9ULX9 164 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 POLHQ9Y253 713 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 PCDHB1Q9Y5F3 818 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 MTUS2Q5JR59 1369 aa6.17□□□□□ -1.42
CD44-231ENST00000531110 GOLGA6L10A0A0M3HER8 536 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 A6NNZ2 444 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 WNT10BO00744 389 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 MATN3O15232 486 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 STAM2O75886 525 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 POMCP01189 267 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 PENKP01210 267 aaPredicted RBP6.16□□□□□ -1.42
CD44-231ENST00000531110 FTH1P19P0C7X4 201 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 RAP2AP10114 183 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 PF4V1P10720 104 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 FERP16591 822 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 FPR1P21462 350 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 MCM3P25205 808 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 CSE1LP55060 971 aaKnown RBP6.16□□□□□ -1.42
CD44-231ENST00000531110 PHEXP78562 749 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 DSC2Q02487 901 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 TLE1Q04724 770 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 LAMB3Q13751 1172 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 GTF2H3Q13889 308 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 WTAPQ15007 396 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 PLCB4Q15147 1175 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 TUBB8Q3ZCM7 444 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 FAAH2Q6GMR7 532 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 CXorf57Q6NSI4 855 aaKnown RBP6.16□□□□□ -1.42
CD44-231ENST00000531110 MTHFD1LQ6UB35 978 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 PACS1Q6VY07 963 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 C11orf96Q7Z7L8 435 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 OR8K1Q8NGG5 319 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 ANKRD27Q96NW4 1050 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 ALS2CR12Q96Q35 445 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 RTFDC1Q9BY42 306 aaPredicted RBP6.16□□□□□ -1.42
CD44-231ENST00000531110 C11orf54Q9H0W9 315 aaPredicted RBP6.16□□□□□ -1.42
CD44-231ENST00000531110 VCX3BQ9H321 246 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 CIDEBQ9UHD4 219 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 ZNF180Q9UJW8 692 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 ITM2BQ9Y287 266 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 CHST2Q9Y4C5 530 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 PCDHA13Q9Y5I0 950 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 ACTL7AQ9Y615 435 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.16□□□□□ -1.42
CD44-231ENST00000531110 PNPLA7Q6ZV29 1317 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 TMEM94Q12767 1356 aa6.16□□□□□ -1.42
CD44-231ENST00000531110 GAPVD1Q14C86 1478 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 TARSL2A2RTX5 802 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 TMEM221A6NGB7 291 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 MBD3O95983 291 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 MTHFD1P11586 935 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 PSMA3P25788 255 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 CCT6AP40227 531 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 TUBB4BP68371 445 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 CTAG1AP78358 180 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 NSUN2Q08J23 767 aaKnown RBP eCLIP6.15□□□□□ -1.42
CD44-231ENST00000531110 COX10Q12887 443 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 DYNC1I2Q13409 638 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 IL10RAQ13651 578 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 ARHGEF6Q15052 776 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 TRIM71Q2Q1W2 868 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 LRRC23Q53EV4 343 aaPredicted RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 ATAT1Q5SQI0 421 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 NXNQ6DKJ4 435 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 ARMC6Q6NXE6 501 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 ARHGAP22Q7Z5H3 698 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 SPRED1Q7Z699 444 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 SYT12Q8IV01 421 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 RHOT2Q8IXI1 618 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 LRRC43Q8N309 656 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 JPH3Q8WXH2 748 aaPredicted RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 SLC35B4Q969S0 331 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 TMX3Q96JJ7 454 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 CABS1Q96KC9 395 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 FAM167AQ96KS9 214 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 DMRTA2Q96SC8 542 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 MAP3K14Q99558 947 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 TSGA10Q9BZW7 698 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 REXO4Q9GZR2 422 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 DHX36Q9H2U1 1008 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 MRPL46Q9H2W6 279 aaKnown RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 MMADHCQ9H3L0 296 aaPredicted RBP6.15□□□□□ -1.42
CD44-231ENST00000531110 LDAHQ9H6V9 325 aa6.15□□□□□ -1.42
CD44-231ENST00000531110 ATP6V0A4Q9HBG4 840 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms