RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MRPL38Q96DV4 380 aaKnown RBP17.28■□□□□ 0.36
LSM1-204ENST00000522515 EMILIN2Q9BXX0 1053 aa17.28■□□□□ 0.36
LSM1-204ENST00000522515 MTMR11A4FU01 709 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 GOLGA6L6A8MZA4 724 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 O00370 1275 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 ABLIM3O94929 683 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 CFHP08603 1231 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 KLRC2P26717 231 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 ADORA2BP29275 332 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 KLHL30Q0D2K2 578 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 CNGA2Q16280 664 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 NFE2Q16621 373 aaPredicted RBP17.27■□□□□ 0.35
LSM1-204ENST00000522515 PTPROQ16827 1216 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 TSR1Q2NL82 804 aaKnown RBP17.27■□□□□ 0.35
LSM1-204ENST00000522515 TAF3Q5VWG9 929 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 ATAD1Q8NBU5 361 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 ZNF461Q8TAF7 563 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 FAM161BQ96MY7 647 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 HNRNPABQ99729 332 aaKnown RBP17.27■□□□□ 0.35
LSM1-204ENST00000522515 RHOBTB2Q9BYZ6 727 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 HAUS4Q9H6D7 363 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 TSPAN16Q9UKR8 245 aa17.27■□□□□ 0.35
LSM1-204ENST00000522515 ADH1AP07327 375 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 PLEKP08567 350 aaPredicted RBP17.26■□□□□ 0.35
LSM1-204ENST00000522515 CHRNB2P17787 502 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 HABP4Q5JVS0 413 aaKnown RBP17.26■□□□□ 0.35
LSM1-204ENST00000522515 C4orf50Q6ZRC1 276 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 SPATA2LQ8IUW3 424 aaPredicted RBP17.26■□□□□ 0.35
LSM1-204ENST00000522515 MED10Q9BTT4 135 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 ZNF518BQ9C0D4 1074 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 CRISPLD1Q9H336 500 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 ABI2Q9NYB9 513 aaPredicted RBP17.26■□□□□ 0.35
LSM1-204ENST00000522515 ARHGAP20Q9P2F6 1191 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.26■□□□□ 0.35
LSM1-204ENST00000522515 PCDHB5Q9Y5E4 795 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 MYO7AQ13402 2215 aa17.26■□□□□ 0.35
LSM1-204ENST00000522515 PER2O15055 1255 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 MED7O43513 233 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 TGM5O43548 720 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 SERPING1P05155 500 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 MMEP08473 750 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 BDNFP23560 247 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 CDR2Q01850 454 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 ADCY1Q08828 1119 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 SMARCB1Q12824 385 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 MEA1Q16626 185 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 GOLGA7BQ2TAP0 167 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 CFAP221Q4G0U5 840 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 TDRD12Q587J7 1177 aaKnown RBP17.25■□□□□ 0.35
LSM1-204ENST00000522515 TPGS2Q68CL5 300 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 LILRA6Q6PI73 481 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 LCLAT1Q6UWP7 414 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 ZNF571Q7Z3V5 609 aaPredicted RBP17.25■□□□□ 0.35
LSM1-204ENST00000522515 RBM23Q86U06 439 aaKnown RBP17.25■□□□□ 0.35
LSM1-204ENST00000522515 FAM35AQ86V20 835 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 TTC9BQ8N6N2 239 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 OLIG1Q8TAK6 271 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 PANX2Q96RD6 677 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 CHP1Q99653 195 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 SYT11Q9BT88 431 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 TMEM30AQ9NV96 361 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 ZNHIT6Q9NWK9 470 aaKnown RBP17.25■□□□□ 0.35
LSM1-204ENST00000522515 AFF4Q9UHB7 1163 aaKnown RBP17.25■□□□□ 0.35
LSM1-204ENST00000522515 MYO9BQ13459 2157 aa17.25■□□□□ 0.35
LSM1-204ENST00000522515 CLASP2O75122 1294 aaKnown RBP17.24■□□□□ 0.35
LSM1-204ENST00000522515 MICAL2O94851 1124 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 SPATA31D3P0C874 917 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 ATF2P15336 505 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 CYP2F1P24903 491 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 CLCN4P51793 760 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 CACNA2D1P54289 1103 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 GSDMDP57764 484 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 FMO1Q01740 532 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 DUSP4Q13115 394 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 STILQ15468 1287 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 SPATA31D4Q6ZUB0 917 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 TTC30AQ86WT1 665 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 ZNF677Q86XU0 584 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 UBA3Q8TBC4 463 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 SPPL2BQ8TCT7 592 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 FUBP3Q96I24 572 aaKnown RBP eCLIP17.24■□□□□ 0.35
LSM1-204ENST00000522515 AGPAT1Q99943 283 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 KRT82Q9NSB4 513 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 PCDHGC3Q9UN70 934 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 SLC27A5Q9Y2P5 690 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 BZW2Q9Y6E2 419 aaKnown RBP17.24■□□□□ 0.35
LSM1-204ENST00000522515 PLXNA3P51805 1871 aa17.24■□□□□ 0.35
LSM1-204ENST00000522515 SEC24AO95486 1093 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 ADGRE1Q14246 886 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 PKDCCQ504Y2 493 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 DENND1BQ6P3S1 775 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 PASD1Q8IV76 773 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 ANKRD52Q8NB46 1076 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 C2orf15Q8WU43 125 aaKnown RBP17.23■□□□□ 0.35
LSM1-204ENST00000522515 TLE6Q9H808 572 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 ABCB6Q9NP58 842 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 HESX1Q9UBX0 185 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 SZT2Q5T011 3432 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 PTPRDP23468 1912 aa17.23■□□□□ 0.35
LSM1-204ENST00000522515 M0QYV0 167 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms