RNA–Protein interactions for RNA: ENST00000515594.5

PHF3-212, Transcript of PHD finger protein 3, humanhuman

TSL 2

Gene PHF3, Length 3,074 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-212ENST00000515594 SKIV2L2P42285 1042 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 FKBP1AP62942 108 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 GNPTABQ3T906 1256 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ACSBG2Q5FVE4 666 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 RINLQ6ZS11 566 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ENOSF1Q7L5Y1 443 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 RELL1Q8IUW5 271 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 RCOR2Q8IZ40 523 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 SCYL3Q8IZE3 742 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 AGGF1Q8N302 714 aaeCLIP13.55□□□□□ -0.246e-8■■■■■ 28.7
PHF3-212ENST00000515594 CLPTM1LQ96KA5 538 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 TCHPQ9BT92 498 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 QTRT2Q9H974 415 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 NXF1Q9UBU9 619 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 FAM237BA0A1B0GVD1 139 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 F5H423 210 aaPredicted RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 K7ERI5 159 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 LGR5O75473 907 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 CDH8P55286 799 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 MORF4L2Q15014 288 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 CDCA2Q69YH5 1023 aaPredicted RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 NIPA1Q7RTP0 329 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 KRT27Q7Z3Y8 459 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 PRPF39Q86UA1 669 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 CEP120Q8N960 986 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 PHC3Q8NDX5 983 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 NMRK1Q9NWW6 199 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 POLIQ9UNA4 740 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 SCINQ9Y6U3 715 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 WASF2Q9Y6W5 498 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ARID2Q68CP9 1835 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 MYO18AQ92614 2054 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 WNT10BO00744 389 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 APBA3O96018 575 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 GJB1P08034 283 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 CD19P15391 556 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 SFNP31947 248 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 CETN2P41208 172 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 BPIFB4P59827 614 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ZBTB16Q05516 673 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 FAAP100Q0VG06 881 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 PARP6Q2NL67 630 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 SNRNP48Q6IEG0 339 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 DENND1BQ6P3S1 775 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ZNF677Q86XU0 584 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 RBM41Q96IZ5 413 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 CALN1Q9BXU9 219 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 JPH1Q9HDC5 661 aaPredicted RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 PDLIM7Q9NR12 457 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 ZFATQ9P243 1243 aa13.55□□□□□ -0.24
PHF3-212ENST00000515594 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.55□□□□□ -0.24
PHF3-212ENST00000515594 CYB561D2O14569 222 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 UGT1A9O60656 530 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 DGAT1O75907 488 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 PYGBP11216 843 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 PSMA2P25787 234 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 IRX4P78413 519 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 MUM1Q2TAK8 710 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 KBTBD12Q3ZCT8 623 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 PTPN20Q4JDL3 420 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 EFHC2Q5JST6 749 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 CES4AQ5XG92 561 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 VSIG10LQ86VR7 867 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 PALM2Q8IXS6 379 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 DEPTORQ8TB45 409 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 MZB1Q8WU39 189 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 DCAKDQ8WVC6 231 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 TMEM120AQ9BXJ8 343 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 UGT1A7Q9HAW7 530 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 UGT1A10Q9HAW8 530 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 UGT1A8Q9HAW9 530 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 CISHQ9NSE2 258 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 XPO7Q9UIA9 1087 aaKnown RBP13.54□□□□□ -0.24
PHF3-212ENST00000515594 SMG5Q9UPR3 1016 aaKnown RBP13.54□□□□□ -0.24
PHF3-212ENST00000515594 FARP1Q9Y4F1 1045 aaPredicted RBP13.54□□□□□ -0.24
PHF3-212ENST00000515594 CNTNAP2Q9UHC6 1331 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 ELK3P41970 407 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 SNRPFP62306 86 aaKnown RBP13.54□□□□□ -0.24
PHF3-212ENST00000515594 BMPR2Q13873 1038 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 RNF220Q5VTB9 566 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 RIBC1Q8N443 379 aaPredicted RBP13.54□□□□□ -0.24
PHF3-212ENST00000515594 MANSC1Q9H8J5 431 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 KCNK13Q9HB14 408 aa13.54□□□□□ -0.24
PHF3-212ENST00000515594 C3orf70A6NLC5 250 aaPredicted RBP13.53□□□□□ -0.24
PHF3-212ENST00000515594 LRCH4O75427 683 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 CSDE1O75534 798 aaKnown RBP13.53□□□□□ -0.24
PHF3-212ENST00000515594 GRAP2O75791 330 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 PTPN4P29074 926 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 RFC5P40937 340 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 TFAMQ00059 246 aaKnown RBP13.53□□□□□ -0.24
PHF3-212ENST00000515594 C1QBPQ07021 282 aaKnown RBP13.53□□□□□ -0.24
PHF3-212ENST00000515594 CCDC6Q16204 474 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 C4orf50Q6ZRC1 276 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 EEPD1Q7L9B9 569 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
PHF3-212ENST00000515594 SLC35B2Q8TB61 432 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 ATP6V0A1Q93050 837 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 CFAP36Q96G28 342 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 TSSK1BQ9BXA7 367 aa13.53□□□□□ -0.24
PHF3-212ENST00000515594 NMUR2Q9GZQ4 415 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms