RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 HELBQ8NG08 1087 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 SDR42E1Q8WUS8 393 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 WNK4Q96J92 1243 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 WRNIP1Q96S55 665 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TRIM56Q9BRZ2 755 aaKnown RBP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 GPSM3Q9Y4H4 160 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 NID2Q14112 1375 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CNTNAP5Q8WYK1 1306 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 SOBPA7XYQ1 873 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 POTECB2RU33 542 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 GIPC1O14908 333 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 GCAP28676 217 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 ARHGAP4P98171 946 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TROAPQ12815 778 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 NDUFA5Q16718 116 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TPTE2Q6XPS3 522 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 TTC13Q8NBP0 860 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 LRGUKQ96M69 825 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CEP63Q96MT8 703 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 HERC2P3Q9BVR0 1158 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 PCDH12Q9NPG4 1184 aa12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 NIP7Q9Y221 180 aaKnown RBP eCLIP12.59□□□□□ -0.39
LIMCH1-213ENST00000511496 CYP2D7A0A087X1C5 515 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 PVALEFA0A1B0GWK0 134 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 NKX2-5P52952 324 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 BNIP3Q12983 259 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 APOFQ13790 326 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 DHRS4L2Q6PKH6 230 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF804AQ7Z570 1209 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 HPS6Q86YV9 775 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 C12orf50Q8NA57 414 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 GOLM1Q8NBJ4 401 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 C12orf43Q96C57 262 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 CCDC138Q96M89 665 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 CFAP57Q96MR6 1250 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 BLOC1S4Q9NUP1 217 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 RABGEF1Q9UJ41 708 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 SOX13Q9UN79 622 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 SNX9Q9Y5X1 595 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 SLC26A4O43511 780 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 NMT2O60551 498 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 NR2F2P24468 414 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 RPA1P27694 616 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 IREB2P48200 963 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 GNA12Q03113 381 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 FAM26FQ5R3K3 315 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ARID3BQ8IVW6 561 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 CHPT1Q8WUD6 406 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ZBED2Q9BTP6 218 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ARIH1Q9Y4X5 557 aaPredicted RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 PXDNQ92626 1479 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 DIP2AQ14689 1571 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 PLEKHG3A1L390 1219 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 MIF4GDA9UHW6 222 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 E5RJQ4 531 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 PROCP04070 461 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 OTUD4Q01804 1114 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 PDIA2Q13087 525 aaKnown RBP12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 IZUMO3Q5VZ72 239 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 KIAA2013Q8IYS2 634 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 OR7G1Q8NGA0 311 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 CTRCQ99895 268 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 LRRC4BQ9NT99 713 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 GCNT4Q9P109 453 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 IGSF9Q9P2J2 1179 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 DAPK2Q9UIK4 370 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 CDC14AQ9UNH5 594 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ERVK-11Q9UQG0 969 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ATP11BQ9Y2G3 1177 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 ZBTB1Q9Y2K1 713 aa12.58□□□□□ -0.4
LIMCH1-213ENST00000511496 LMNB1P20700 586 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ATXN3P54252 364 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 KCNQ4P56696 695 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 FASTKD3Q14CZ7 662 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 CARTPTQ16568 116 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 PFKFB3Q16875 520 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ARHGAP44Q17R89 818 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 COBLL1Q53SF7 1204 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 GRAMD2AQ8IUY3 354 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 RPGRQ92834 1020 aaKnown RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 UIMC1Q96RL1 719 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 RANBP9Q96S59 729 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 KLC2Q9H0B6 622 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 SIGLEC1Q9BZZ2 1709 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 C1orf232A0A0U1RR37 186 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ESRRBO95718 433 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF23P17027 643 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 IVDP26440 423 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 PHKA1P46020 1223 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 MAPK10P53779 464 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 CDKL1Q00532 357 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 PERM1Q5SV97 790 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF790Q6PG37 636 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 HEATR3Q7Z4Q2 680 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 REM2Q8IYK8 340 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ABTB2Q8N961 1025 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 SNX29Q8TEQ0 813 aa12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 ZNF395Q9H8N7 513 aaPredicted RBP12.57□□□□□ -0.4
LIMCH1-213ENST00000511496 MARCH7Q9H992 704 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms