RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 KIAA1522Q9P206 1035 aaPredicted RBP5.24□□□□□ -1.57
NUP54-206ENST00000508465 FAM184BQ9ULE4 1060 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 DMRT1Q9Y5R6 373 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 NR2E3Q9Y5X4 410 aa5.24□□□□□ -1.57
NUP54-206ENST00000508465 PARP14Q460N5 1801 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 ASB14A6NK59 587 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 KBTBD13C9JR72 458 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 MATN2O00339 956 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 CYTH3O43739 400 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 CENPBP07199 599 aaPredicted RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 C6orf222P0C671 652 aaPredicted RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 HOXA13P31271 388 aaPredicted RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 MCM5P33992 734 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 MEOX1P50221 254 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 TNFAIP2Q03169 654 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 TROAPQ12815 778 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 GRM4Q14833 912 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 SART3Q15020 963 aaKnown RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 SLC10A6Q3KNW5 377 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 TAPT1Q6NXT6 567 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 CASC1Q6TDU7 716 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 SLC39A5Q6ZMH5 540 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 EP400NLQ6ZTU2 488 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 HOMER1Q86YM7 354 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 FBXO16Q8IX29 292 aaPredicted RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 SRBD1Q8N5C6 995 aaKnown RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.23□□□□□ -1.57
NUP54-206ENST00000508465 CLIP3Q96DZ5 547 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 TAAR1Q96RJ0 339 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 PIGSQ96S52 555 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 ALG1Q9BT22 464 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 ABHD16BQ9H3Z7 469 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 RIC8BQ9NVN3 520 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 COL20A1Q9P218 1284 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 NAP1L2Q9ULW6 460 aaPredicted RBP5.23□□□□□ -1.57
NUP54-206ENST00000508465 ATP11BQ9Y2G3 1177 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 PCDHA1Q9Y5I3 950 aa5.23□□□□□ -1.57
NUP54-206ENST00000508465 CCDC69A6NI79 296 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 DNM1LO00429 736 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 SH2B2O14492 632 aaPredicted RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 CTAGE5O15320 804 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 DUSP11O75319 330 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 PLEKHA8P1O95397 391 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 GJB6O95452 261 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 PEX11BO96011 259 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 CFBP00751 764 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 HMGB1P09429 215 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 AKR1A1P14550 325 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 ALDH5A1P51649 535 aaPredicted RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 ACLYP53396 1101 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 EXOSC10Q01780 885 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 TLE2Q04725 743 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 TRIM60Q495X7 471 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 IQSEC1Q6DN90 963 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 KCNT2Q6UVM3 1135 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 RNF180Q86T96 592 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 ULK2Q8IYT8 1036 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 D2HGDHQ8N465 521 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 MSL3Q8N5Y2 521 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 KLHDC9Q8NEP7 349 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 MTMR8Q96EF0 704 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 SGSM3Q96HU1 749 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 NEK1Q96PY6 1258 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 RMDN3Q96TC7 470 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 AMNQ9BXJ7 453 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 WDR11Q9BZH6 1224 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 CD244Q9BZW8 370 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 WDR26Q9H7D7 661 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 NRBP1Q9UHY1 535 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 MRPL11Q9Y3B7 192 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 SNX14Q9Y5W7 946 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 CEP290O15078 2479 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 A0A0G2JMZ2 1700 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 BAZ2BQ9UIF8 2168 aaKnown RBP5.22□□□□□ -1.57
NUP54-206ENST00000508465 ABCB11O95342 1321 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 SYNRGQ9UMZ2 1314 aa5.22□□□□□ -1.57
NUP54-206ENST00000508465 TRIM43BA6NCK2 446 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 TMEM191CA6NGB0 347 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 CAPN14A8MX76 684 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 ZBTB5O15062 677 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 PRODHO43272 600 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 PQBP1O60828 265 aaKnown RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 DTNBO60941 627 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 ASGR1P07306 291 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 MYCLP12524 364 aaPredicted RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 TCF3P15923 654 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 CAPN2P17655 700 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 PTPN1P18031 435 aaKnown RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 NT5C2P49902 561 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 PSMC6P62333 389 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 EIF4HQ15056 248 aaKnown RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 TBR1Q16650 682 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 FSCN1Q16658 493 aaKnown RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 LY6KQ17RY6 165 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 ARHGEF16Q5VV41 709 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 CCSAPQ6IQ19 270 aaPredicted RBP5.21□□□□□ -1.58
NUP54-206ENST00000508465 CXCL17Q6UXB2 119 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 SYNE3Q6ZMZ3 975 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 SEPT14Q6ZU15 432 aa5.21□□□□□ -1.58
NUP54-206ENST00000508465 OTOP2Q7RTS6 562 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms