RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SRSF5Q13243 272 aaKnown RBP22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 CFAP221Q4G0U5 840 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 TXNDC8Q6A555 127 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 LRRTM3Q86VH5 581 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 CCDC65Q8IXS2 484 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 EFCAB13Q8IY85 973 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 ADGRF2Q8IZF7 708 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 TMEM130Q8N3G9 435 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 TTC16Q8NEE8 873 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 ARRDC1-AS1Q9H2J1 176 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 KIAA1586Q9HCI6 787 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 VPS45Q9NRW7 570 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 GDAP2Q9NXN4 497 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 SNX9Q9Y5X1 595 aa22.57■■□□□ 1.2
SQSTM1-210ENST00000506042 WDR87Q6ZQQ6 2873 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 GPR179Q6PRD1 2367 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 KIF26AQ9ULI4 1882 aaPredicted RBP22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 EXTL3O43909 919 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 RNF40O75150 1001 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 NOL4O94818 638 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 NFATC1O95644 943 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 APBB3O95704 486 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 HMGA1P17096 107 aaKnown RBP22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 PSMD2Q13200 908 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 SCN4BQ8IWT1 228 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 OSCP1Q8WVF1 389 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 CD101Q93033 1021 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 MYRFLQ96LU7 910 aa22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 SRPRBQ9Y5M8 271 aaKnown RBP22.56■■□□□ 1.2
SQSTM1-210ENST00000506042 DENND4CQ5VZ89 1909 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 CENPBP07199 599 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 PPP3CCP48454 512 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 ST3GAL2Q16842 350 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 FSTL4Q6MZW2 842 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 VSTM1Q6UX27 236 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 CRELD2Q6UXH1 353 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 SYT13Q7L8C5 426 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 GPD1LQ8N335 351 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 EPSTI1Q96J88 318 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 ZC3H10Q96K80 434 aaKnown RBP22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 ECT2Q9H8V3 914 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 HPS4Q9NQG7 708 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 MAGEC2Q9UBF1 373 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 ANGPTL2Q9UKU9 493 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 L1RE1Q9UN81 338 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 GREB1Q4ZG55 1949 aa22.55■■□□□ 1.2
SQSTM1-210ENST00000506042 TISP43B9A030 160 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 PPP1R37O75864 691 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 MAGEA11P43364 429 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 DDR2Q16832 855 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 TRIM68Q6AZZ1 485 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 C1orf127Q8N9H9 656 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 SAAL1Q96ER3 474 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 PANK4Q9NVE7 773 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 GTF3C4Q9UKN8 822 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 CDH9Q9ULB4 789 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 CCL26Q9Y258 94 aa22.54■■□□□ 1.2
SQSTM1-210ENST00000506042 ZNF233A6NK53 670 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 SLC9A3R1O14745 358 aaPredicted RBP22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 CYP2F1P24903 491 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 ADSSP30520 456 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 GJA4P35212 333 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 MPLP40238 635 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 RAP1GAPP47736 663 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 AMPD3Q01432 767 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 USP39Q53GS9 565 aaKnown RBP22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 KIAA1958Q8N8K9 716 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 TRPM5Q9NZQ8 1165 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 TBC1D7Q9P0N9 293 aa22.53■■□□□ 1.2
SQSTM1-210ENST00000506042 TRIM66O15016 1216 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 EGFP01133 1207 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 HDCP19113 662 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 GALK1P51570 392 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 DUOXA2Q1HG44 320 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 LMBRD2Q68DH5 695 aaPredicted RBP22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 TMEM150AQ86TG1 271 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 KBTBD6Q86V97 674 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 RPLP0P6Q8NHW5 317 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 STRA6Q9BX79 667 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 EBF1Q9UH73 591 aa22.52■■□□□ 1.2
SQSTM1-210ENST00000506042 ALDH1A2O94788 518 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 PRPF6O94906 941 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 ARSAP15289 507 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 TCF3P15923 654 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 ACAT1P24752 427 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 GBP1P32455 592 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 GRIK1P39086 918 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 PXNP49023 591 aaPredicted RBP22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 CDR1P51861 262 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 GRIN1Q05586 938 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 USP4Q13107 963 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 DMC1Q14565 340 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 PREPLQ4J6C6 727 aaPredicted RBP22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 STPG1Q5TH74 334 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 DAB2IPQ5VWQ8 1189 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 RNF43Q68DV7 783 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 DDX42Q86XP3 938 aaKnown RBP eCLIP22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 TSTD1Q8NFU3 115 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 HPDLQ96IR7 371 aa22.51■■□□□ 1.19
SQSTM1-210ENST00000506042 SPATA17Q96L03 361 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms