RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 F8VP50 259 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 O00370 1275 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 RNF8O76064 485 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 FSBPO95073 299 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 ITGB3P05106 788 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 NFICP08651 508 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 GABRB2P47870 512 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 TM4SF4P48230 202 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 OSTNP61366 133 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 RBP5P82980 135 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 INCA1Q0VD86 236 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 MKRN3Q13064 507 aaKnown RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 ITIH4Q14624 930 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 PCBP1Q15365 356 aaKnown RBP eCLIP12.61□□□□□ -0.39
NUP54-202ENST00000502850 TRIP13Q15645 432 aaPredicted RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 AMHR2Q16671 573 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 PTPN20Q4JDL3 420 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 DAB2IPQ5VWQ8 1189 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 KAZNQ674X7 775 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 WDTC1Q8N5D0 677 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 COPS5Q92905 334 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 ARHGEF2Q92974 986 aaKnown RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 SLC10A4Q96EP9 437 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 SEC16BQ96JE7 1060 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 DDX23Q9BUQ8 820 aaKnown RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 MCOLN1Q9GZU1 580 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 SAMD15Q9P1V8 674 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 DDX20Q9UHI6 824 aaKnown RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 SIX4Q9UIU6 781 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 TPX2Q9ULW0 747 aaKnown RBP12.61□□□□□ -0.39
NUP54-202ENST00000502850 POLIQ9UNA4 740 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 DERAQ9Y315 318 aa12.61□□□□□ -0.39
NUP54-202ENST00000502850 ZNF236Q9UL36 1845 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 PI4K2BG5E9Z4 385 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 GOLGA8SH3BPF8 625 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 GPR25O00155 361 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 GJB6O95452 261 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 CETPP11597 493 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 DRD4P21917 467 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 SLCO1A2P46721 670 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 VPS41P49754 854 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 ARSEP51690 589 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 IGBP1P78318 339 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 IFI35P80217 286 aaPredicted RBP12.6□□□□□ -0.39
NUP54-202ENST00000502850 SLC25A11Q02978 314 aaKnown RBP12.6□□□□□ -0.39
NUP54-202ENST00000502850 MYO1EQ12965 1108 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 OASLQ15646 514 aaKnown RBP12.6□□□□□ -0.39
NUP54-202ENST00000502850 CNGA2Q16280 664 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 CYP4A22Q5TCH4 519 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 SPRYD7Q5W111 196 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 JADE1Q6IE81 842 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 TAPT1Q6NXT6 567 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 C6orf89Q6UWU4 347 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 PPP1R21Q6ZMI0 780 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 BBS12Q6ZW61 710 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 CENPUQ71F23 418 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 MICALL1Q8N3F8 863 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 CEP120Q8N960 986 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 SLC4A11Q8NBS3 891 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 CCDC197Q8NCU1 140 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 DYDC1Q8WWB3 177 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 HPDLQ96IR7 371 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 RBM15Q96T37 977 aaKnown RBP eCLIP12.6□□□□□ -0.393e-11■■■■■ 43.2
NUP54-202ENST00000502850 ADAM7Q9H2U9 754 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 RNPEPQ9H4A4 650 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 MINDY3Q9H8M7 445 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 UBN1Q9NPG3 1134 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 ASNSD1Q9NWL6 643 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 SENP1Q9P0U3 644 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 DNPEPQ9ULA0 475 aa12.6□□□□□ -0.39
NUP54-202ENST00000502850 BARX2Q9UMQ3 279 aaPredicted RBP12.6□□□□□ -0.39
NUP54-202ENST00000502850 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.6□□□□□ -0.39
NUP54-202ENST00000502850 A0A087WZ62 844 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 CCDC85CA6NKD9 419 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 SETSIPP0DME0 302 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 KRT10P13645 584 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ADORA2AP29274 412 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 PCK1P35558 622 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 MAGEA4P43358 317 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 OGDHQ02218 1023 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 SREBF2Q12772 1141 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 TAZQ16635 292 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 KYNUQ16719 465 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 LONRF1Q17RB8 773 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 RNF187Q5TA31 235 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 MTHFD1LQ6UB35 978 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ARHGEF18Q6ZSZ5 1173 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 EXOC3L1Q86VI1 746 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 XYLT1Q86Y38 959 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 TDRPQ86YL5 185 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 UHMK1Q8TAS1 419 aaKnown RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 SLC35B2Q8TB61 432 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 MDM1Q8TC05 714 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 AFG1LQ8WV93 481 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 NLRP7Q8WX94 980 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 MCRS1Q96EZ8 462 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 ACAP3Q96P50 834 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 PLCD4Q9BRC7 762 aa12.59□□□□□ -0.39
NUP54-202ENST00000502850 FDXACB1Q9BRP7 624 aaPredicted RBP12.59□□□□□ -0.39
NUP54-202ENST00000502850 EFCC1Q9HA90 598 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms