RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TMEM35BQ8NCS4 154 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC35B2Q8TB61 432 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TMEM121Q9BTD3 319 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PITPNM3Q9BZ71 974 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MTMR12Q9C0I1 747 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TRABDQ9H4I3 376 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TRIM33Q9UPN9 1127 aa16.93■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SPDYE16A6NNV3 312 aaPredicted RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MSCO60682 206 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RFC5P40937 340 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 AP3M2P53677 418 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC18A1P54219 525 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PIGHQ14442 188 aaPredicted RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DCUN1D2Q6PH85 259 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZBTB33Q86T24 672 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SPOCK2Q92563 424 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PRCCQ92733 491 aaPredicted RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KLHL29Q96CT2 875 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TBC1D31Q96DN5 1066 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FAXDC2Q96IV6 333 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IMPG2Q9BZV3 1241 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KLHL14Q9P2G3 628 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 LRRD1A4D1F6 860 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FAM155AB1AL88 458 aaPredicted RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 C19orf81C9J6K1 198 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 BTBD19C9JJ37 291 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 IBSPP21815 317 aaPredicted RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FKBP1BP68106 108 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CCDC15Q0P6D6 951 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CYP4A22Q5TCH4 519 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ARFGAP1Q8N6T3 406 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PAIP2Q9BPZ3 127 aaKnown RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZNF518BQ9C0D4 1074 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PCDH9Q9HC56 1237 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DDX56Q9NY93 547 aaKnown RBP16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PCDHGC3Q9UN70 934 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MGAMO43451 1857 aa16.92■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ABLIM1O14639 778 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 BANF1O75531 89 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 WEE2P0C1S8 567 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CCNB1P14635 433 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 EZRP15311 586 aaKnown RBP16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PSMC4P43686 418 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GPX6P59796 221 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GAD2Q05329 585 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SNAPC2Q13487 334 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TLDC1Q6P9B6 456 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RGS9BPQ6ZS82 235 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CAPN12Q6ZSI9 719 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ZBED8Q8IZ13 594 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 AGAP11Q8TF27 550 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PRPF31Q8WWY3 499 aaKnown RBP16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NIF3L1Q9GZT8 377 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 VPS37BQ9H9H4 285 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 KCNH4Q9UQ05 1017 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SHOC2Q9UQ13 582 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 STARD13Q9Y3M8 1113 aa16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FARP1Q9Y4F1 1045 aaPredicted RBP16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.91■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ANKRD33BA6NCL7 494 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 A8MUI8 341 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MAFO75444 373 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 FARP2O94887 1054 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 UBA1P22314 1058 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 EIF4BP23588 611 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ELF1P32519 619 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RPA3P35244 121 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 APLP1P51693 650 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TAP1Q03518 808 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ACCSLQ4AC99 568 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ERICH1Q86X53 443 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 C4orf33Q8N1A6 199 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DNERQ8NFT8 737 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 MAF1Q9H063 256 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SAE1Q9UBE0 346 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CLUHO75153 1309 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPM1 405 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 HGSO14964 777 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TYROBPO43914 113 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TOM1L1O75674 476 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC25A11Q02978 314 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PDIA2Q13087 525 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DNAJC3Q13217 504 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SPARCL1Q14515 664 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 RASA2Q15283 850 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLC1A5Q15758 541 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SGSM1Q2NKQ1 1148 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 DENND1BQ6P3S1 775 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 CENPUQ71F23 418 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ACO2Q99798 780 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ASCC2Q9H1I8 757 aaPredicted RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 C10orf88Q9H8K7 445 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 EBF2Q9HAK2 575 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TXNRD2Q9NNW7 524 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SLCO1B3Q9NPD5 702 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 NRBP2Q9NSY0 501 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 TJP2Q9UDY2 1190 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 PHTF1Q9UMS5 762 aa16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 SMG5Q9UPR3 1016 aaKnown RBP16.9■□□□□ 0.3
MSH5-SAPCD1-208ENST00000498473 ANK1P16157 1881 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms