RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 ZDHHC9Q9Y397 364 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 ATP6V1DQ9Y5K8 247 aa13.65□□□□□ -0.22
PTPRF-214ENST00000496043 NCANO14594 1321 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 SLC38A8A6NNN8 435 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 PHACTR2O75167 634 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 ATP2C2O75185 946 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 PFKFB1P16118 471 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 AVPR1AP37288 418 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 MAGEA11P43364 429 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 STK4Q13043 487 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 KMT5BQ4FZB7 885 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 MAMSTRQ6ZN01 415 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 TMEM150AQ86TG1 271 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 MON1AQ86VX9 555 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 ZNF687Q8N1G0 1237 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 MAB21L3Q8N8X9 362 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 KBTBD7Q8WVZ9 684 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 ATRIPQ8WXE1 791 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 ZNF516Q92618 1163 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 SYT15Q9BQS2 421 aa13.64□□□□□ -0.23
PTPRF-214ENST00000496043 PTPRZ1P23471 2315 aaPredicted RBP13.64□□□□□ -0.23
PTPRF-214ENST00000496043 HCRTO43612 131 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TACC1O75410 805 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 NOL4O94818 638 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 ATICP31939 592 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 SYKP43405 635 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 AP3M2P53677 418 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TNNC1P63316 161 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 MTAPQ13126 283 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 WDR72Q3MJ13 1102 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TXNDC8Q6A555 127 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 VSTM1Q6UX27 236 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 RALGPS2Q86X27 583 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 OR6B3Q8NGW1 331 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TTC8Q8TAM2 541 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 CCDC47Q96A33 483 aaKnown RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 SYAP1Q96A49 352 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TRMT2BQ96GJ1 504 aaKnown RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 ZFYVE19Q96K21 471 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 MYRFLQ96LU7 910 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 IER2Q9BTL4 223 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 SCAND2PQ9GZW5 306 aaPredicted RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 SMG9Q9H0W8 520 aaKnown RBP13.63□□□□□ -0.23
PTPRF-214ENST00000496043 GKN1Q9NS71 199 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 TDP1Q9NUW8 608 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 DMAC2Q9NW81 257 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 HPSEQ9Y251 543 aa13.63□□□□□ -0.23
PTPRF-214ENST00000496043 SPECC1L-ADORA2AF8WAN1 911 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PDXKO00764 312 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 KINO60870 393 aaKnown RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 KIF20AO95235 890 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PRAMEF12O95522 483 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 STAU1O95793 577 aaKnown RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 RPN1P04843 607 aaKnown RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CHRNB1P11230 501 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 BDNFP23560 247 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 GRIK1P39086 918 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 MYL6P60660 151 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PSMC1P62191 440 aaKnown RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CYP27A1Q02318 531 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 LRRC32Q14392 662 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PPP2R5DQ14738 602 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 ITPRIPL2Q3MIP1 535 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 SLC9A9Q8IVB4 645 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 FSIP1Q8NA03 581 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 MYCBPAPQ8TBZ2 947 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PARD3BQ8TEW8 1205 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 TMEM174Q8WUU8 243 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 USP13Q92995 863 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 SPATA17Q96L03 361 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CEP295NLQ96MC4 621 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 MRPL45Q9BRJ2 306 aaKnown RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 FAM126AQ9BYI3 521 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CHRDQ9H2X0 955 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 KIF9Q9HAQ2 790 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CRTAC1Q9NQ79 661 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 ZSCAN32Q9NX65 697 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 GTSE1Q9NYZ3 720 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 PCDHGA2Q9Y5H1 932 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 TCHHQ07283 1943 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 CACNA1IQ9P0X4 2223 aa13.62□□□□□ -0.23
PTPRF-214ENST00000496043 FAM237AA0A1B0GTK4 181 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 PTPN1P18031 435 aaKnown RBP13.61□□□□□ -0.23
PTPRF-214ENST00000496043 ANXA13P27216 316 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 SOX9P48436 509 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 NDUFA8P51970 172 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 NRLP54845 237 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 BIRC3Q13489 604 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 ZNF268Q14587 947 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-214ENST00000496043 CCDC142Q17RM4 750 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 DGKKQ5KSL6 1271 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 CC2D1AQ6P1N0 951 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-214ENST00000496043 KIAA0895Q8NCT3 520 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 STKLD1Q8NE28 680 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 MYLPFQ96A32 169 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 CHAMP1Q96JM3 812 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 GZF1Q9H116 711 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-214ENST00000496043 KCTD10Q9H3F6 313 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 EHD2Q9NZN4 543 aa13.61□□□□□ -0.23
PTPRF-214ENST00000496043 NXF1Q9UBU9 619 aaKnown RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms