RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 PCDHGA9Q9Y5G4 932 aaKnown RBP5.44□□□□□ -1.54
SMC4-223ENST00000493695 PCDHGA8Q9Y5G5 932 aa5.44□□□□□ -1.54
SMC4-223ENST00000493695 PCDHGA7Q9Y5G6 932 aa5.44□□□□□ -1.54
SMC4-223ENST00000493695 PCDHGA6Q9Y5G7 932 aa5.44□□□□□ -1.54
SMC4-223ENST00000493695 PCDHGA3Q9Y5H0 932 aa5.44□□□□□ -1.54
SMC4-223ENST00000493695 PRSS29PA6NIE9 313 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 PDE8BO95263 885 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 VIL1P09327 827 aaKnown RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 CCND1P24385 295 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 CCKBRP32239 447 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 PXNP49023 591 aaPredicted RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 TOB1P50616 345 aaPredicted RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 BOP1Q14137 746 aaKnown RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 PCBP2Q15366 365 aaKnown RBP eCLIP5.43□□□□□ -1.54
SMC4-223ENST00000493695 FAM160B1Q5W0V3 765 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 SHC4Q6S5L8 630 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 CRELD2Q6UXH1 353 aaPredicted RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 PARS2Q7L3T8 475 aaKnown RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 MIER2Q8N344 545 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 CBARPQ8N350 705 aaPredicted RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 FAM109AQ8N4B1 249 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 DDX17Q92841 729 aaKnown RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 EBF3Q9H4W6 596 aa5.43□□□□□ -1.54
SMC4-223ENST00000493695 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.43□□□□□ -1.54
SMC4-223ENST00000493695 CYP2D7A0A087X1C5 515 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 MYO1FO00160 1098 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 ARIH2O95376 493 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 FTH1P19P0C7X4 201 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 ZNF134P52741 427 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 TPTEP56180 551 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 DSC2Q02487 901 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 LAMB3Q13751 1172 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 INAVAQ3KP66 663 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 LONRF3Q496Y0 759 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 L1TD1Q5T7N2 865 aaKnown RBP5.42□□□□□ -1.54
SMC4-223ENST00000493695 SYDE2Q5VT97 1194 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 EGFLAMQ63HQ2 1017 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 HEATR3Q7Z4Q2 680 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 DDX42Q86XP3 938 aaKnown RBP eCLIP5.42□□□□□ -1.54
SMC4-223ENST00000493695 C8orf58Q8NAV2 365 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 ADAMTS15Q8TE58 950 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 GLG1Q92896 1179 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 DPCDQ9BVM2 203 aaPredicted RBP5.42□□□□□ -1.54
SMC4-223ENST00000493695 ZNF580Q9UK33 172 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 TRHDEQ9UKU6 1024 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 AFG3L2Q9Y4W6 797 aa5.42□□□□□ -1.54
SMC4-223ENST00000493695 SHROOM4Q9ULL8 1493 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 SHTN1A0MZ66 631 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 A1L4Q6 167 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 SOCS2O14508 198 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 AHSGP02765 367 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 IL1R2P27930 398 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 LILRA4P59901 499 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 RAPGEF1Q13905 1077 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 ZNF268Q14587 947 aaPredicted RBP5.41□□□□□ -1.54
SMC4-223ENST00000493695 DAZAP2Q15038 168 aaPredicted RBP5.41□□□□□ -1.54
SMC4-223ENST00000493695 TBC1D25Q3MII6 688 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 THEMIS2Q5TEJ8 643 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 FCRL6Q6DN72 434 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 RGS7BPQ6MZT1 257 aaPredicted RBP5.41□□□□□ -1.54
SMC4-223ENST00000493695 NECAB2Q7Z6G3 386 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 SAMD14Q8IZD0 417 aaPredicted RBP5.41□□□□□ -1.54
SMC4-223ENST00000493695 ABHD11Q8NFV4 315 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 ATG4AQ8WYN0 398 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 CCDC8Q9H0W5 538 aaPredicted RBP5.41□□□□□ -1.54
SMC4-223ENST00000493695 WDCPQ9H6R7 721 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 ZDHHC8Q9ULC8 765 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 SH2B3Q9UQQ2 575 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 PCDHA1Q9Y5I3 950 aa5.41□□□□□ -1.54
SMC4-223ENST00000493695 UBE2Q2LH0YL09 131 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 FTLP02792 175 aaPredicted RBP5.4□□□□□ -1.54
SMC4-223ENST00000493695 LOXL3P58215 753 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 SATB1Q01826 763 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 NOGQ13253 232 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 IQCB1Q15051 598 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 AMOTQ4VCS5 1084 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 PPP1R32Q7Z5V6 425 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 MRPL10Q7Z7H8 261 aaKnown RBP5.4□□□□□ -1.54
SMC4-223ENST00000493695 FAM90A1Q86YD7 464 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 NRACQ8N912 160 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 NSMCE1Q8WV22 266 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 CUL5Q93034 780 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 RITA1Q96K30 269 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 FAM118BQ9BPY3 351 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 FSD1LQ9BXM9 530 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 MRPL46Q9H2W6 279 aaKnown RBP5.4□□□□□ -1.54
SMC4-223ENST00000493695 TFCP2L1Q9NZI6 479 aa5.4□□□□□ -1.54
SMC4-223ENST00000493695 IGKV2D-30A0A075B6S6 120 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 POC1B-GALNT4F8VUJ3 575 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 DSCR3O14972 297 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 DTNBO60941 627 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 USP1O94782 785 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 ATXN1LP0C7T5 689 aaKnown RBP5.39□□□□□ -1.55
SMC4-223ENST00000493695 PIM1P11309 404 aaPredicted RBP5.39□□□□□ -1.55
SMC4-223ENST00000493695 KCNJ5P48544 419 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 GUCY2FP51841 1108 aa5.39□□□□□ -1.55
SMC4-223ENST00000493695 ADKP55263 362 aaKnown RBP5.39□□□□□ -1.55
SMC4-223ENST00000493695 KRTAP10-7P60409 375 aaPredicted RBP5.39□□□□□ -1.55
SMC4-223ENST00000493695 EXOSC9Q06265 439 aaKnown RBP5.39□□□□□ -1.55
SMC4-223ENST00000493695 E2F2Q14209 437 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms