RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 DDR2Q16832 855 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 DUOXA2Q1HG44 320 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 RSPO4Q2I0M5 234 aaPredicted RBP17.82■□□□□ 0.44
PTPRU-208ENST00000493601 SOWAHAQ2M3V2 549 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 SDHAF4Q5VUM1 108 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 LMBRD2Q68DH5 695 aaPredicted RBP17.82■□□□□ 0.44
PTPRU-208ENST00000493601 TXNDC8Q6A555 127 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 CC2D1AQ6P1N0 951 aaPredicted RBP17.82■□□□□ 0.44
PTPRU-208ENST00000493601 CNNM4Q6P4Q7 775 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 DPH6Q7L8W6 267 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 MON1AQ86VX9 555 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 OSTM1Q86WC4 334 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 CBWD2Q8IUF1 395 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 WDR49Q8IV35 697 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 IQUBQ8NA54 791 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 STKLD1Q8NE28 680 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 GLIS3Q8NEA6 775 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 USP13Q92995 863 aaPredicted RBP17.82■□□□□ 0.44
PTPRU-208ENST00000493601 HPS3Q969F9 1004 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 DHX58Q96C10 678 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 HPDLQ96IR7 371 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 MYRFLQ96LU7 910 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 FAM83CQ9BQN1 747 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 MAGEF1Q9HAY2 307 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 GKN1Q9NS71 199 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 GTF3C4Q9UKN8 822 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 USP18Q9UMW8 372 aa17.82■□□□□ 0.44
PTPRU-208ENST00000493601 HELZP42694 1942 aaKnown RBP17.82■□□□□ 0.44
PTPRU-208ENST00000493601 GREB1Q4ZG55 1949 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 K7ESF4 209 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 CUTAO60888 179 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 CNR2P34972 360 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 RUNX3Q13761 415 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 FAM26FQ5R3K3 315 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 SCARA3Q6AZY7 606 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 C4orf50Q6ZRC1 276 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 PRR23BQ6ZRT6 265 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 LONP2Q86WA8 852 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 FSIP1Q8NA03 581 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 OR5B17Q8NGF7 314 aa17.81■□□□□ 0.44
PTPRU-208ENST00000493601 TFIP11Q9UBB9 837 aaKnown RBP17.81■□□□□ 0.44
PTPRU-208ENST00000493601 PTPRDP23468 1912 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 ANAPC1Q9H1A4 1944 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 PRR5-ARHGAP8B1AHC4 643 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 CHURC1-FNTBB4DL54 471 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 TADA3O75528 432 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 MAGEA11P43364 429 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 FNTBP49356 437 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 ARHGAP8P85298 464 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 AMPD2Q01433 879 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 GRSF1Q12849 480 aaKnown RBP eCLIP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 SIM2Q14190 667 aaPredicted RBP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 PDGFRLQ15198 375 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 MAPRE1Q15691 268 aaKnown RBP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 SNRNP35Q16560 246 aaKnown RBP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 LPAL2Q16609 132 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 FAM171BQ6P995 826 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 EPM2AIP1Q7L775 607 aaPredicted RBP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 LIMS2Q7Z4I7 341 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 SYT15Q9BQS2 421 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 EBF3Q9H4W6 596 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 TRPC7Q9HCX4 862 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 HPS4Q9NQG7 708 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 CDV3Q9UKY7 258 aaKnown RBP17.8■□□□□ 0.44
PTPRU-208ENST00000493601 CDH9Q9ULB4 789 aa17.8■□□□□ 0.44
PTPRU-208ENST00000493601 TRAV19A0A0A6YYK7 116 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 HCRTO43612 131 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 LRP3O75074 770 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 USP17L7P0C7H9 530 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 PDIA4P13667 645 aaKnown RBP17.79■□□□□ 0.44
PTPRU-208ENST00000493601 HOXA6P31267 233 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 HOXD13P35453 343 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 SNRPFP62306 86 aaKnown RBP17.79■□□□□ 0.44
PTPRU-208ENST00000493601 FAM160A1Q05DH4 1040 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 DMWDQ09019 674 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 CCDC142Q17RM4 750 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 TRIM68Q6AZZ1 485 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 SHC4Q6S5L8 630 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.79■□□□□ 0.44
PTPRU-208ENST00000493601 SCN4BQ8IWT1 228 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 ZNF507Q8TCN5 953 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 KBTBD7Q8WVZ9 684 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 EXOC4Q96A65 974 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 CEP295NLQ96MC4 621 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 FNBP1Q96RU3 617 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 AGPAT3Q9NRZ7 376 aa17.79■□□□□ 0.44
PTPRU-208ENST00000493601 TRDMT1O14717 391 aaKnown RBP17.78■□□□□ 0.44
PTPRU-208ENST00000493601 CKMP06732 381 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 RETP07949 1114 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 DLATP10515 647 aaKnown RBP17.78■□□□□ 0.44
PTPRU-208ENST00000493601 ARSAP15289 507 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 WARSP23381 471 aaKnown RBP17.78■□□□□ 0.44
PTPRU-208ENST00000493601 PDE6CP51160 858 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 PSMC1P62191 440 aaKnown RBP17.78■□□□□ 0.44
PTPRU-208ENST00000493601 MTF1Q14872 753 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 TMEM196Q5HYL7 178 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 HEATR6Q6AI08 1181 aaKnown RBP17.78■□□□□ 0.44
PTPRU-208ENST00000493601 VSTM1Q6UX27 236 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 UNC13DQ70J99 1090 aa17.78■□□□□ 0.44
PTPRU-208ENST00000493601 HS2ST1Q7LGA3 356 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms