RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 STXBP4Q6ZWJ1 553 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 EPM2AIP1Q7L775 607 aaPredicted RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 GPR161Q8N6U8 529 aaKnown RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 SPATA18Q8TC71 538 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 ZNF507Q8TCN5 953 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 FOXD4L4Q8WXT5 416 aaPredicted RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 MRPS31Q92665 395 aaKnown RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 DHX58Q96C10 678 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 CHFRQ96EP1 664 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 HPDLQ96IR7 371 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 ANKRD36BP1Q96IX9 119 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 ZNF396Q96N95 335 aaPredicted RBP13.09□□□□□ -0.31
VPS16-208ENST00000487461 LRRC27Q9C0I9 530 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 PARD6AQ9NPB6 346 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 TDP1Q9NUW8 608 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 HSPBP1Q9NZL4 362 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 CACNA1AO00555 2505 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 TCHHQ07283 1943 aa13.09□□□□□ -0.31
VPS16-208ENST00000487461 MED19A0JLT2 244 aaPredicted RBP13.08□□□□□ -0.32
VPS16-208ENST00000487461 TGFB1I1O43294 461 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 TADA3O75528 432 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 ARSAP15289 507 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 PCSK1P29120 753 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 AMPD3Q01432 767 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 MYO1EQ12965 1108 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 SRSF5Q13243 272 aaKnown RBP13.08□□□□□ -0.32
VPS16-208ENST00000487461 RUNX3Q13761 415 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 CFAP221Q4G0U5 840 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 HEATR6Q6AI08 1181 aaKnown RBP13.08□□□□□ -0.32
VPS16-208ENST00000487461 CNNM4Q6P4Q7 775 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 DPH6Q7L8W6 267 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 SPATA2LQ8IUW3 424 aaPredicted RBP13.08□□□□□ -0.32
VPS16-208ENST00000487461 SCN4BQ8IWT1 228 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 SYNPOQ8N3V7 929 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 RDH13Q8NBN7 331 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 KBTBD7Q8WVZ9 684 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 TRMT2BQ96GJ1 504 aaKnown RBP13.08□□□□□ -0.32
VPS16-208ENST00000487461 MYRFLQ96LU7 910 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 CYP2S1Q96SQ9 504 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 C7orf25Q9BPX7 421 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 CUEDC2Q9H467 287 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 EBF3Q9H4W6 596 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 DMXL1Q9Y485 3027 aa13.08□□□□□ -0.32
VPS16-208ENST00000487461 TRDMT1O14717 391 aaKnown RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 CUTAO60888 179 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 CST3P01034 146 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 TNNC2P02585 160 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 PDGFRBP09619 1106 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 ASIC1P78348 528 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 SIM2Q14190 667 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 ZNF268Q14587 947 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 SURF1Q15526 300 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 TMEM196Q5HYL7 178 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 FSTL4Q6MZW2 842 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 PKN3Q6P5Z2 889 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 PRR23BQ6ZRT6 265 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 TRAPPC11Q7Z392 1133 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 LONP2Q86WA8 852 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 IQUBQ8NA54 791 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 FUBP3Q96I24 572 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS16-208ENST00000487461 SLC22A12Q96S37 553 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 KIAA1586Q9HCI6 787 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 FBRSL1Q9HCM7 1045 aaKnown RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 CRTAC1Q9NQ79 661 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 MAGEC2Q9UBF1 373 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 UXTQ9UBK9 157 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 GMEB2Q9UKD1 530 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 RAB23Q9ULC3 237 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 USP18Q9UMW8 372 aa13.07□□□□□ -0.32
VPS16-208ENST00000487461 R3HCC1Q9Y3T6 440 aaKnown RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 NUP210Q8TEM1 1887 aaPredicted RBP13.07□□□□□ -0.32
VPS16-208ENST00000487461 CLIC2O15247 247 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 EIF3DO15371 548 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS16-208ENST00000487461 POLR2DO15514 142 aaKnown RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 YEATS4O95619 227 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 RETP07949 1114 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 WARSP23381 471 aaKnown RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 CASP1P29466 404 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 HOXA6P31267 233 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 MAGEA11P43364 429 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 GALK1P51570 392 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 ATXN1P54253 815 aaKnown RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 PSMC1P62191 440 aaKnown RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 EHHADHQ08426 723 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 SPEM2Q0P670 501 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 GRSF1Q12849 480 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS16-208ENST00000487461 FOXD4L6Q3SYB3 417 aaPredicted RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 FAM26FQ5R3K3 315 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 LAIR1Q6GTX8 287 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 CC2D1AQ6P1N0 951 aaPredicted RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 FOXD4L3Q6VB84 417 aaPredicted RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 WDR49Q8IV35 697 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 SCFD1Q8WVM8 642 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 ZNF516Q92618 1163 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 SNX21Q969T3 373 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 SYT15Q9BQS2 421 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 MRPL45Q9BRJ2 306 aaKnown RBP13.06□□□□□ -0.32
VPS16-208ENST00000487461 BLZF1Q9H2G9 400 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 KIF9Q9HAQ2 790 aa13.06□□□□□ -0.32
VPS16-208ENST00000487461 TRPC7Q9HCX4 862 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms