RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GOLGA8IPA6NC78 632 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 GOLGA8JA6NMD2 632 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 TRDMT1O14717 391 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 RHOBTB1O94844 696 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 EGFP01133 1207 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 ITGB3P05106 788 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 SCP2P22307 547 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 NOVA1P51513 510 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 TFAMQ00059 246 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 CREB5Q02930 508 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 DDR2Q16832 855 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 PLK5Q496M5 336 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 CC2D1AQ6P1N0 951 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 BRAPQ7Z569 592 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 METTL23Q86XA0 190 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 KRI1Q8N9T8 703 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 SPPL2BQ8TCT7 592 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 EXOC4Q96A65 974 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 SLC22A12Q96S37 553 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 PKMYT1Q99640 499 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 DSEQ9UL01 958 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 MAGED2Q9UNF1 606 aaPredicted RBP14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 PTPRJQ12913 1337 aa14.9□□□□□ -0.02
SQSTM1-208ENST00000485412 ANTXRLA6NF34 631 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 PAX3P23760 479 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 CYP2F1P24903 491 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 CEBPZQ03701 1054 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 SV2CQ496J9 727 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 LMBRD2Q68DH5 695 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 SLFN12LQ6IEE8 588 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 THEM5Q8N1Q8 247 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 GLIS3Q8NEA6 775 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 EZH1Q92800 747 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 CBWD1Q9BRT8 395 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 DUSP15Q9H1R2 295 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 MRPL44Q9H9J2 332 aaKnown RBP14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 KIF9Q9HAQ2 790 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 SIX4Q9UIU6 781 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 AGAP1Q9UPQ3 857 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 PCDHB5Q9Y5E4 795 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 MYOFQ9NZM1 2061 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 THADAQ6YHU6 1953 aa14.89□□□□□ -0.03
SQSTM1-208ENST00000485412 C4orf47A7E2U8 309 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 PRPF40AO75400 957 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 CAVIN2O95810 425 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 BMP15O95972 392 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 DRD1P21728 446 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 DDX6P26196 483 aaKnown RBP eCLIP14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 ZNF252P-AS1Q0IIN9 211 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 FOXC1Q12948 553 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 RESTQ13127 1097 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 L1TD1Q5T7N2 865 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 DAB2IPQ5VWQ8 1189 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 UNQ6494/PRO21346Q6UXR6 183 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 BRSK2Q8IWQ3 736 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 TTC16Q8NEE8 873 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 RPLP0P6Q8NHW5 317 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 C2orf15Q8WU43 125 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 CYP2S1Q96SQ9 504 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 P2RY13Q9BPV8 354 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 PANK2Q9BZ23 570 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 PCIF1Q9H4Z3 704 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 PDE11AQ9HCR9 933 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 TDP1Q9NUW8 608 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 DDX43Q9NXZ2 648 aaKnown RBP14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 FRYQ5TBA9 3013 aa14.88□□□□□ -0.03
SQSTM1-208ENST00000485412 ABCA7Q8IZY2 2146 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 BAHCC1Q9P281 2608 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 C1QTNF9BB2RNN3 333 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 DCLK1O15075 740 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 ATP2C2O75185 946 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 IL18RAPO95256 599 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 GCNT3O95395 438 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 APBB3O95704 486 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 C1QTNF9P0C862 333 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 GBP1P32455 592 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 GALK1P51570 392 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 SMARCB1Q12824 385 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 PSMD2Q13200 908 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 PDGFRLQ15198 375 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 FBXO43Q4G163 708 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 DCP1BQ8IZD4 617 aaKnown RBP14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 NOC3LQ8WTT2 800 aaKnown RBP14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 MRPS31Q92665 395 aaKnown RBP14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 HPS3Q969F9 1004 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 ACDQ96AP0 544 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 HVCN1Q96D96 273 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 ZNF560Q96MR9 790 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 MTMR12Q9C0I1 747 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 RBAKQ9NYW8 714 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 STK17AQ9UEE5 414 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 GTF3C4Q9UKN8 822 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 ZMIZ1Q9ULJ6 1067 aa14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-208ENST00000485412 GIPC1O14908 333 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 PRPF6O94906 941 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 TSPY1Q01534 308 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 DMC1Q14565 340 aa14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 INTS6LQ5JSJ4 861 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-208ENST00000485412 RRAGBQ5VZM2 374 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms