RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 DGKKQ5KSL6 1271 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 FAM26FQ5R3K3 315 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 MAMSTRQ6ZN01 415 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 ERMP1Q7Z2K6 904 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 SPEM1Q8N4L4 309 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 RDH13Q8NBN7 331 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 USP13Q92995 863 aaPredicted RBP16.35■□□□□ 0.21
LIMS3-203ENST00000480744 TRPC7Q9HCX4 862 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 ABCB6Q9NP58 842 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 GKN1Q9NS71 199 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 RAB23Q9ULC3 237 aa16.35■□□□□ 0.21
LIMS3-203ENST00000480744 CEP250Q9BV73 2442 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 CHURC1-FNTBB4DL54 471 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 EIF3DO15371 548 aaKnown RBP eCLIP16.34■□□□□ 0.21
LIMS3-203ENST00000480744 ATP2C2O75185 946 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 CASP1P29466 404 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 HOXD13P35453 343 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 FNTBP49356 437 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 CYP2J2P51589 502 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 PSMC1P62191 440 aaKnown RBP16.34■□□□□ 0.21
LIMS3-203ENST00000480744 DUOXA2Q1HG44 320 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 WDR44Q5JSH3 913 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 HEATR6Q6AI08 1181 aaKnown RBP16.34■□□□□ 0.21
LIMS3-203ENST00000480744 TRIM68Q6AZZ1 485 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 PRR23BQ6ZRT6 265 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 HSCBQ8IWL3 235 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 NELFCDQ8IXH7 590 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 SPATA18Q8TC71 538 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 PKMYT1Q99640 499 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 SYT15Q9BQS2 421 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 EBF3Q9H4W6 596 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 KIAA1586Q9HCI6 787 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 TDP1Q9NUW8 608 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 UXTQ9UBK9 157 aaPredicted RBP16.34■□□□□ 0.21
LIMS3-203ENST00000480744 GMEB2Q9UKD1 530 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 DCHS1Q96JQ0 3298 aa16.34■□□□□ 0.21
LIMS3-203ENST00000480744 GABRDO14764 452 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 CLIC2O15247 247 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 POLR2DO15514 142 aaKnown RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 NOL4O94818 638 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 PDGFRBP09619 1106 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 ZSCAN22P10073 491 aaPredicted RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 DLATP10515 647 aaKnown RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 TNNI1P19237 187 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 ME1P48163 572 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 DMWDQ09019 674 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 SNRNP35Q16560 246 aaKnown RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 CC2D1AQ6P1N0 951 aaPredicted RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 C4orf50Q6ZRC1 276 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 EPM2AIP1Q7L775 607 aaPredicted RBP16.33■□□□□ 0.2
LIMS3-203ENST00000480744 MON1AQ86VX9 555 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 WDR49Q8IV35 697 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 ZNF507Q8TCN5 953 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 SNX21Q969T3 373 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 CCDC127Q96BQ5 260 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 FNBP1Q96RU3 617 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 MMS19Q96T76 1030 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 C7orf25Q9BPX7 421 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 BLZF1Q9H2G9 400 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 KIF9Q9HAQ2 790 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 AGPAT3Q9NRZ7 376 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 FAM13BQ9NYF5 915 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 USP18Q9UMW8 372 aa16.33■□□□□ 0.2
LIMS3-203ENST00000480744 TADA3O75528 432 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 UBE4BO95155 1302 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 F13A1P00488 732 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 LMO2P25791 158 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 AFMP43652 599 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 CYP27A1Q02318 531 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 RUNX3Q13761 415 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 RSPO4Q2I0M5 234 aaPredicted RBP16.32■□□□□ 0.2
LIMS3-203ENST00000480744 CFAP221Q4G0U5 840 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 UNC13DQ70J99 1090 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 DPH6Q7L8W6 267 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 TRAPPC11Q7Z392 1133 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 DGLUCYQ7Z3D6 616 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 SPRYD3Q8NCJ5 442 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 KBTBD7Q8WVZ9 684 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 MYLPFQ96A32 169 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 TRMT2BQ96GJ1 504 aaKnown RBP16.32■□□□□ 0.2
LIMS3-203ENST00000480744 FUBP3Q96I24 572 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIMS3-203ENST00000480744 FAM83CQ9BQN1 747 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 MAGEF1Q9HAY2 307 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 HPS4Q9NQG7 708 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 MAGEC2Q9UBF1 373 aaPredicted RBP16.32■□□□□ 0.2
LIMS3-203ENST00000480744 CDH9Q9ULB4 789 aa16.32■□□□□ 0.2
LIMS3-203ENST00000480744 TRAV19A0A0A6YYK7 116 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 TGFB1I1O43294 461 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CKMP06732 381 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 ARSAP15289 507 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 SRSF5Q13243 272 aaKnown RBP16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CCINQ13939 588 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 SIM2Q14190 667 aaPredicted RBP16.31■□□□□ 0.2
LIMS3-203ENST00000480744 PUM1Q14671 1186 aaKnown RBP eCLIP16.31■□□□□ 0.2
LIMS3-203ENST00000480744 CNNM4Q6P4Q7 775 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 HS2ST1Q7LGA3 356 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 GPR161Q8N6U8 529 aaKnown RBP16.31■□□□□ 0.2
LIMS3-203ENST00000480744 XXYLT1Q8NBI6 393 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 RIN3Q8TB24 985 aa16.31■□□□□ 0.2
LIMS3-203ENST00000480744 SCFD1Q8WVM8 642 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms