RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, humanhuman

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-213ENST00000480658 HOXD13P35453 343 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 NLRP12P59046 1061 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 CLDN10P78369 228 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 NUCB2P80303 420 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 PDGFRLQ15198 375 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 NFIL3Q16649 462 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 WDR72Q3MJ13 1102 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 MIA3Q5JRA6 1907 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 FAM171BQ6P995 826 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 FRMD5Q7Z6J6 570 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 MON1AQ86VX9 555 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 TTC9BQ8N6N2 239 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 GPR161Q8N6U8 529 aaKnown RBP12.24□□□□□ -0.45
CCM2-213ENST00000480658 CCDC150Q8NCX0 1101 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 MYCBPAPQ8TBZ2 947 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 ATRIPQ8WXE1 791 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 HPS3Q969F9 1004 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 CCDC127Q96BQ5 260 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 ZSWIM3Q96MP5 696 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 NOTCH4Q99466 2003 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 PI4K2AQ9BTU6 479 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 PLA2G2FQ9BZM2 168 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 CHRDQ9H2X0 955 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 TDP1Q9NUW8 608 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 SERTAD1Q9UHV2 236 aa12.24□□□□□ -0.45
CCM2-213ENST00000480658 TRAV19A0A0A6YYK7 116 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 A0A1B0GVL5 298 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 MYBPHLA2RUH7 354 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 ARNTLO00327 626 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 RHOBTB3O94955 611 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 USP17L7P0C7H9 530 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 SP9P0CG40 484 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 GJA1P17302 382 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 TARSP26639 723 aaKnown RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 GNL1P36915 607 aaPredicted RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 VIPR2P41587 438 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 NOP14P78316 857 aaKnown RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 FAM160A1Q05DH4 1040 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 BIRC3Q13489 604 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 PKP1Q13835 747 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 KCNB1Q14721 858 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 ZNF699Q32M78 642 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 ITPRIPL2Q3MIP1 535 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 KMT5BQ4FZB7 885 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 ZNF667Q5HYK9 610 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 DENND5BQ6ZUT9 1274 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 INTS8Q75QN2 995 aaKnown RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 LRRTM3Q86VH5 581 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 TTC39CQ8N584 583 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 RDH13Q8NBN7 331 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 GLIS3Q8NEA6 775 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 PDZD8Q8NEN9 1154 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 OR5B17Q8NGF7 314 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 PKMYT1Q99640 499 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 FAM124BQ9H5Z6 455 aaPredicted RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 IL21Q9HBE4 155 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 PRMT8Q9NR22 394 aaPredicted RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 ZSCAN32Q9NX65 697 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 GTF3C4Q9UKN8 822 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 MAGED2Q9UNF1 606 aaPredicted RBP12.23□□□□□ -0.45
CCM2-213ENST00000480658 TRAF3IP3Q9Y228 551 aa12.23□□□□□ -0.45
CCM2-213ENST00000480658 SCN1AP35498 2009 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 PTPRJQ12913 1337 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 CLIC2O15247 247 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 STX10O60499 249 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 ATG13O75143 517 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 SOAT2O75908 522 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 F11P03951 625 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 NR3C1P04150 777 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 CKMP06732 381 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 KRT13P13646 458 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 TCF3P15923 654 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 HMGA1P17096 107 aaKnown RBP12.22□□□□□ -0.45
CCM2-213ENST00000480658 GRIK1P39086 918 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 WNT7BP56706 349 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 CYP27A1Q02318 531 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 STK4Q13043 487 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 SGSM1Q2NKQ1 1148 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 LMBRD2Q68DH5 695 aaPredicted RBP12.22□□□□□ -0.45
CCM2-213ENST00000480658 DDX42Q86XP3 938 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCM2-213ENST00000480658 SPRYD3Q8NCJ5 442 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 ZSWIM2Q8NEG5 633 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 OR6B3Q8NGW1 331 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 TMC2Q8TDI7 906 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 PARD3BQ8TEW8 1205 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 GIPC2Q8TF65 315 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 KBTBD7Q8WVZ9 684 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 OVCA2Q8WZ82 227 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 ATP2A3Q93084 1043 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 FAXDC2Q96IV6 333 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 C8orf48Q96LL4 319 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 SLITRK1Q96PX8 696 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 PHOX2BQ99453 314 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 MKNK1Q9BUB5 465 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 NDRG2Q9UN36 371 aaKnown RBP12.22□□□□□ -0.45
CCM2-213ENST00000480658 COL4A2P08572 1712 aa12.22□□□□□ -0.45
CCM2-213ENST00000480658 PATJQ8NI35 1801 aa12.21□□□□□ -0.45
CCM2-213ENST00000480658 SLC38A8A6NNN8 435 aa12.21□□□□□ -0.45
CCM2-213ENST00000480658 A8MXQ7 604 aa12.21□□□□□ -0.45
CCM2-213ENST00000480658 SPECC1L-ADORA2AF8WAN1 911 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms