RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 CYP4F22Q6NT55 531 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 DENND1BQ6P3S1 775 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 DRICH1Q6PGQ1 229 aaPredicted RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 CXCL17Q6UXB2 119 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 MRPL10Q7Z7H8 261 aaKnown RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 FAM228AQ86W67 206 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 VSIG1Q86XK7 387 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 TMEM86AQ8N2M4 240 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 WDTC1Q8N5D0 677 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 TTC13Q8NBP0 860 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 APPL2Q8NEU8 664 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 HDAC7Q8WUI4 952 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 TMEM40Q8WWA1 233 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 RSPH1Q8WYR4 309 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 LENG1Q96BZ8 264 aaPredicted RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 FAM84AQ96KN4 292 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 HSFY1Q96LI6 401 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 RUFY1Q96T51 708 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 ERP44Q9BS26 406 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 AP1M1Q9BXS5 423 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 DDX47Q9H0S4 455 aaKnown RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 SDCBP2Q9H190 292 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 SNX25Q9H3E2 840 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 NXF3Q9H4D5 531 aaKnown RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 CDHR5Q9HBB8 845 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 FAM105AQ9NUU6 356 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 TMEM51Q9NW97 253 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 ASNSD1Q9NWL6 643 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 SMARCAL1Q9NZC9 954 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 EHD2Q9NZN4 543 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 DDX20Q9UHI6 824 aaKnown RBP8.38□□□□□ -1.07
VMA21-203ENST00000477649 GABRQQ9UN88 632 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 ST3GAL5Q9UNP4 418 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 SNX9Q9Y5X1 595 aa8.38□□□□□ -1.07
VMA21-203ENST00000477649 GOLGA6BA6NDN3 693 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 SASH3O75995 380 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 RNF8O76064 485 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ECEL1O95672 775 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PGK1P00558 417 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ASGR1P07306 291 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 FGFR4P22455 802 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 RDXP35241 583 aaKnown RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 GNL1P36915 607 aaPredicted RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 COILP38432 576 aaPredicted RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 HSPA9P38646 679 aaKnown RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 BCAT1P54687 386 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 CDH8P55286 799 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 SLC7A5Q01650 507 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PDCLQ13371 301 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ZNF211Q13398 564 aaPredicted RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 HIC1Q14526 733 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 HLTFQ14527 1009 aaKnown RBP eCLIP8.37□□□□□ -1.07
VMA21-203ENST00000477649 KCNA10Q16322 511 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 CCNG2Q16589 344 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PTPN20Q4JDL3 420 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 FAM47CQ5HY64 1035 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 DUPD1Q68J44 220 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 GDF6Q6KF10 455 aaPredicted RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 SND1Q7KZF4 910 aaKnown RBP eCLIP8.37□□□□□ -1.07
VMA21-203ENST00000477649 TMEM110Q86TL2 294 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 XYLT1Q86Y38 959 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PRELID2Q8N945 189 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ANKRD52Q8NB46 1076 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ARRDC4Q8NCT1 418 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 SMG8Q8ND04 991 aaKnown RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 ATL2Q8NHH9 583 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 RAET1EQ8TD07 263 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 CASKIN2Q8WXE0 1202 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 GLT1D1Q96MS3 346 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 UROC1Q96N76 676 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 ZMAT2Q96NC0 199 aaKnown RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 MCEEQ96PE7 176 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 CNPY3Q9BT09 278 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 OSBPL8Q9BZF1 889 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 FOXP3Q9BZS1 431 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PRDM16Q9HAZ2 1276 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 SAGE1Q9NXZ1 904 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 MTRF1LQ9UGC7 380 aaKnown RBP8.37□□□□□ -1.07
VMA21-203ENST00000477649 AMACRQ9UHK6 382 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 HPCAL4Q9UM19 191 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 NOD1Q9Y239 953 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 PCDHGA4Q9Y5G9 962 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 SCN10AQ9Y5Y9 1956 aa8.37□□□□□ -1.07
VMA21-203ENST00000477649 MGAMO43451 1857 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 ANK1P16157 1881 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 MYADML2A6NDP7 307 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 A8MXQ7 604 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 ZNF487B1APH4 448 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 GOLGA8KD6RF30 607 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 DPYSL4O14531 572 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 ZNF189O75820 626 aaPredicted RBP8.36□□□□□ -1.07
VMA21-203ENST00000477649 SLC34A2O95436 690 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 THP07101 528 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 CFHP08603 1231 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 RARAP10276 462 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 COL6A1P12109 1028 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 ITIH2P19823 946 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 PSMA2P25787 234 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 RAP1GAPP47736 663 aa8.36□□□□□ -1.07
VMA21-203ENST00000477649 LHX1P48742 406 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms