RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 AARSP49588 968 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 CLRN1P58418 232 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 RAC3P60763 192 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 UBE3AQ05086 875 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 ZKSCAN2Q63HK3 967 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 FAM205BPQ63HN1 556 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 LMBRD2Q68DH5 695 aaPredicted RBP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 CCDC129Q6ZRS4 1044 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 ZNF365Q70YC5 407 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 FRMD5Q7Z6J6 570 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 SDR16C5Q8N3Y7 309 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 LSMEM1Q8N8F7 131 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 GLIS1Q8NBF1 620 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 TDRD7Q8NHU6 1098 aaKnown RBP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 CYP2W1Q8TAV3 490 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 ATP6V1E2Q96A05 226 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 LSM14BQ9BX40 385 aaKnown RBP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 ZNF518BQ9C0D4 1074 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 TAF1DQ9H5J8 278 aaPredicted RBP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 NSMCE4AQ9NXX6 385 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 RGL1Q9NZL6 768 aa4.74□□□□□ -1.65
VPS13D-207ENST00000476169 HERC5Q9UII4 1024 aaKnown RBP4.74□□□□□ -1.65
VPS13D-207ENST00000476169 ABCC9O60706 1549 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 A0A087X0M5 115 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CCDC196A0A1B0GTZ2 297 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 A0A1B0GX30 115 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PGPEP1LA6NFU8 196 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CLCA1A8K7I4 914 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 ZNF785A8K8V0 405 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PYCARD-AS1I3L0S3 204 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 B4GALT4O60513 344 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 USP1O94782 785 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 FARP2O94887 1054 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 UNC5CO95185 931 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 ITGA5P08648 1049 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 C1QTNF9P0C862 333 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 GYS1P13807 737 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CALRP27797 417 aaKnown RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PRKAA2P54646 552 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CASP6P55212 293 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 LINC00310P59036 64 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 RNASE9P60153 205 aaKnown RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 MXRA7P84157 204 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 KIAA2012Q0VF49 1180 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CTBP1Q13363 440 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CUL4BQ13620 913 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PSMD6Q15008 389 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PLCB4Q15147 1175 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 SMAD1Q15797 465 aaKnown RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 MEA1Q16626 185 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 VMACQ2NL98 169 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 ANKS6Q68DC2 871 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 TANGO2Q6ICL3 276 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 RINLQ6ZS11 566 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 BRINP3Q76B58 766 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 GET4Q7L5D6 327 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 MICU3Q86XE3 530 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 PDSS2Q86YH6 399 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 DNAJC5GQ8N7S2 189 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 LINC01356Q8N9X3 169 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 ADAMTS18Q8TE60 1221 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 HERVK_113Q902F9 699 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 DDX17Q92841 729 aaKnown RBP4.73□□□□□ -1.65
VPS13D-207ENST00000476169 SNX27Q96L92 541 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 NELL2Q99435 816 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CCDC68Q9H2F9 335 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 CD320Q9NPF0 282 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 NECTIN3Q9NQS3 549 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 MRGBPQ9NV56 204 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 HAUS2Q9NVX0 235 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 SLC45A2Q9UMX9 530 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 HDAC5Q9UQL6 1122 aa4.73□□□□□ -1.65
VPS13D-207ENST00000476169 MYO1CO00159 1063 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 MATN2O00339 956 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 TOR1BO14657 336 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 DNAJB5O75953 348 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ACTL6BO94805 426 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 STARD3NLO95772 234 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ANXA1P04083 346 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 KRT1P04264 644 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 GRPP07492 148 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 HNRNPA1P09651 372 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 AKR1B1P15121 316 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 KLRC1P26715 233 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 POLD2P49005 469 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ZNF135P52742 658 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 POLE2P56282 527 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ARF3P61204 181 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 POU6F2P78424 691 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ARF1P84077 181 aaKnown RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 DUSP8Q13202 625 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 TAF11Q15544 211 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 BMT2Q1RMZ1 405 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ATXN7L2Q5T6C5 722 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 UTP14CQ5TAP6 766 aaKnown RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 ARL6IP4Q66PJ3 421 aaKnown RBP4.72□□□□□ -1.65
VPS13D-207ENST00000476169 FAM111BQ6SJ93 734 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 USP49Q70CQ1 688 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 CHD1LQ86WJ1 897 aa4.72□□□□□ -1.65
VPS13D-207ENST00000476169 XYLT1Q86Y38 959 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms