RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 MAFGO15525 162 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 ITGAVP06756 1048 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 TBXAS1P24557 533 aaPredicted RBP22.17■■□□□ 1.14
COL18A1-207ENST00000473212 IL1R2P27930 398 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 CDKN2BP42772 138 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 JOSD2Q8TAC2 188 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 TTC8Q8TAM2 541 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 PCYT2Q99447 389 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 TCHPQ9BT92 498 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 CISHQ9NSE2 258 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 DCTN4Q9UJW0 460 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 HMGB2P26583 209 aaKnown RBP22.17■■□□□ 1.14
COL18A1-207ENST00000473212 RAP1GAPP47736 663 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 RASSF2P50749 326 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 OVGP1Q12889 678 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 FNBP1LQ5T0N5 605 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 EMC1Q8N766 993 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 NKD2Q969F2 451 aaPredicted RBP22.17■■□□□ 1.14
COL18A1-207ENST00000473212 ZBTB10Q96DT7 871 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 CYTH4Q9UIA0 394 aa22.17■■□□□ 1.14
COL18A1-207ENST00000473212 MAFBQ9Y5Q3 323 aaPredicted RBP22.17■■□□□ 1.14
COL18A1-207ENST00000473212 LCTP09848 1927 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 H0YCG3 227 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 ZWINTO95229 277 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 ASS1P00966 412 aaKnown RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 PTPRAP18433 802 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 RFC1P35251 1148 aaPredicted RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 NAMPTP43490 491 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 BLMHQ13867 455 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 TAF5Q15542 800 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 SEPT7Q16181 437 aaKnown RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 SLC45A4Q5BKX6 768 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 LRRC38Q5VT99 294 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 FYB2Q5VWT5 728 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 XRRA1Q6P2D8 792 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 EEPD1Q7L9B9 569 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 ZNF280CQ8ND82 737 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 PYROXD1Q8WU10 500 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 SLC7A3Q8WY07 619 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 C2CD2LO14523 706 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 ENTPD5O75356 428 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 CTCFP49711 727 aaPredicted RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 CAPRIN2Q6IMN6 1127 aaKnown RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 DENND2DQ9H6A0 471 aaPredicted RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 PPCSQ9HAB8 311 aa22.16■■□□□ 1.14
COL18A1-207ENST00000473212 ALG13Q9NP73 1137 aaKnown RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 FARP1Q9Y4F1 1045 aaPredicted RBP22.16■■□□□ 1.14
COL18A1-207ENST00000473212 FAM189A1O60320 539 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 DKC1O60832 514 aaKnown RBP eCLIP22.15■■□□□ 1.14
COL18A1-207ENST00000473212 CALB1P05937 261 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 GJB1P08034 283 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PRKG1Q13976 671 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 RASA2Q15283 850 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PPP1R2P3Q6NXS1 205 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 DENND1BQ6P3S1 775 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 CEP120Q8N960 986 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 RFWD2Q8NHY2 731 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 ACTL9Q8TC94 416 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 TCP10LQ8TDR4 215 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PAFAH2Q99487 392 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 POLIQ9UNA4 740 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 LRRC42Q9Y546 428 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PIGRP01833 764 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 SRGAP2CP0DJJ0 459 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 MARK3P27448 753 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 RXRBP28702 533 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PTPN4P29074 926 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 OTUD4Q01804 1114 aaKnown RBP22.15■■□□□ 1.14
COL18A1-207ENST00000473212 PPP1R15BQ5SWA1 713 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 C3orf62Q6ZUJ4 267 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 RHPN2Q8IUC4 686 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 SLC17A7Q9P2U7 560 aa22.15■■□□□ 1.14
COL18A1-207ENST00000473212 C3orf70A6NLC5 250 aaPredicted RBP22.14■■□□□ 1.14
COL18A1-207ENST00000473212 TRAFD1O14545 582 aaPredicted RBP22.14■■□□□ 1.14
COL18A1-207ENST00000473212 LUC7L3O95232 432 aaKnown RBP22.14■■□□□ 1.14
COL18A1-207ENST00000473212 PTPN20Q4JDL3 420 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 CLNKQ7Z7G1 428 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 MICALL2Q8IY33 904 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 SLC35B2Q8TB61 432 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 R3HDMLQ9H3Y0 253 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 ACAD9Q9H845 621 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 KANSL3Q9P2N6 904 aa22.14■■□□□ 1.14
COL18A1-207ENST00000473212 KAT6AQ92794 2004 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 PHIPQ8WWQ0 1821 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 PHBP35232 272 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 PTPN7P35236 360 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 TFAMQ00059 246 aaKnown RBP22.14■■□□□ 1.13
COL18A1-207ENST00000473212 CTC1Q2NKJ3 1217 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 GNPTABQ3T906 1256 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 SLFN12LQ6IEE8 588 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 TRIM50Q86XT4 487 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 LRRC71Q8N4P6 559 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 ZNF276Q8N554 614 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 ATP11CQ8NB49 1132 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 PRPF31Q8WWY3 499 aaKnown RBP22.14■■□□□ 1.13
COL18A1-207ENST00000473212 CPT1BQ92523 772 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 ANKRD27Q96NW4 1050 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 PCSK1NQ9UHG2 260 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 AGTPBP1Q9UPW5 1226 aa22.14■■□□□ 1.13
COL18A1-207ENST00000473212 CCDC189A1A4V9 331 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms