RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DMTF1Q9Y222 760 aa5.49□□□□□ -1.53
CCDC88A-210ENST00000468534 FAM50BQ9Y247 325 aa5.49□□□□□ -1.53
CCDC88A-210ENST00000468534 RUVBL1Q9Y265 456 aaKnown RBP5.49□□□□□ -1.53
CCDC88A-210ENST00000468534 F5H423 210 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 H0Y3Z8 333 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 PMM2O15305 246 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 KIF5CO60282 957 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ERN1O75460 977 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 CPEP16870 476 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 TMED1Q13445 227 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 GALEQ14376 348 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 GRM3Q14832 879 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ZNF169Q14929 603 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 PPP2R5BQ15173 497 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 PKN2Q16513 984 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 TTC31Q49AM3 519 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 RILPL1Q5EBL4 403 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ZNF362Q5T0B9 420 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 BRINP3Q76B58 766 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 RTL10Q7L3V2 364 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 MCM10Q7L590 875 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 TBC1D1Q86TI0 1168 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 TPH2Q8IWU9 490 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 LSMEM1Q8N8F7 131 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ZNF384Q8TF68 577 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 LMBR1Q8WVP7 490 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 POF1BQ8WVV4 589 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ATP6V1E2Q96A05 226 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ZMAT2Q96NC0 199 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 POLR3CQ9BUI4 534 aaPredicted RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 MRPL9Q9BYD2 267 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 GALNT9Q9HCQ5 603 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 TBC1D22BQ9NU19 505 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 PDRG1Q9NUG6 133 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 LRIT1Q9P2V4 623 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 SCOCQ9UIL1 159 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 PA2G4Q9UQ80 394 aaKnown RBP5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 SPEF1Q9Y4P9 236 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 ACTL7AQ9Y615 435 aa5.48□□□□□ -1.53
CCDC88A-210ENST00000468534 GPRASP1Q5JY77 1395 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 ERICH4A6NGS2 130 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 KIF1CO43896 1103 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 MBD4O95243 580 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 IGLV2-14P01704 120 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 IFIT1P09914 478 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 MTHFD2P13995 350 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 GCSHP23434 173 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 RPS6KB1P23443 525 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 GUCY1A2P33402 732 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 GALNSP34059 522 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 CTNNA1P35221 906 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 HOXD12P35452 270 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 MRPS35P82673 323 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 TMPRSS15P98073 1019 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 PLIN5Q00G26 463 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 SATB1Q01826 763 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 PPP3CAQ08209 521 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 TUBB8Q3ZCM7 444 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 MINDY4Q4G0A6 757 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 INTS11Q5TA45 600 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 TAF3Q5VWG9 929 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 SPATA1Q5VX52 437 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 CYB5RLQ6IPT4 315 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 UNC5DQ6UXZ4 953 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 CYP26C1Q6V0L0 522 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 LHFPL2Q6ZUX7 228 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 IQCF2Q8IXL9 164 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 CCHCR1Q8TD31 782 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 ACTRT2Q8TDY3 377 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 PARD3BQ8TEW8 1205 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 GIMAP1Q8WWP7 306 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 HOXB13Q92826 284 aaPredicted RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 SNX21Q969T3 373 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 NACC2Q96BF6 587 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 ZBTB10Q96DT7 871 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 PTCD3Q96EY7 689 aaKnown RBP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 AIFM2Q9BRQ8 373 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 ATP6V0A4Q9HBG4 840 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 DDX21Q9NR30 783 aaKnown RBP eCLIP5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 ANKEF1Q9NU02 776 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 TMEM140Q9NV12 185 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 MRGBPQ9NV56 204 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 HOXC10Q9NYD6 342 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 SUN2Q9UH99 717 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 SLC23A1Q9UHI7 598 aa5.47□□□□□ -1.53
CCDC88A-210ENST00000468534 TRIM64A6NGJ6 449 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 TRIM64BA6NI03 449 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 GABRDO14764 452 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 GFPT2O94808 682 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 CDK4P11802 303 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 OSMP13725 252 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 GSPT1P15170 499 aaKnown RBP5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 PCSK1P29120 753 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 MAPK9P45984 424 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 UBASH3AP57075 661 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 MPP1Q00013 466 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 PPP2R5CQ13362 524 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 VPS53Q5VIR6 699 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 KCNK18Q7Z418 384 aa5.46□□□□□ -1.54
CCDC88A-210ENST00000468534 SRLQ86TD4 932 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms