RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 TTC9BQ8N6N2 239 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 TRMT2BQ96GJ1 504 aaKnown RBP12.64□□□□□ -0.39
VPS52-213ENST00000461743 CORO1BQ9BR76 489 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 APOBEC3GQ9HC16 384 aaKnown RBP12.64□□□□□ -0.39
VPS52-213ENST00000461743 ANO10Q9NW15 660 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 HCFC1R1Q9NWW0 138 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 EHD2Q9NZN4 543 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 UXTQ9UBK9 157 aaPredicted RBP12.64□□□□□ -0.39
VPS52-213ENST00000461743 GTF3C4Q9UKN8 822 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 SORCS3Q9UPU3 1222 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 SLC27A5Q9Y2P5 690 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 MRPS23Q9Y3D9 190 aaKnown RBP12.64□□□□□ -0.39
VPS52-213ENST00000461743 TICRRQ7Z2Z1 1910 aa12.64□□□□□ -0.39
VPS52-213ENST00000461743 SOBPA7XYQ1 873 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 PI4K2BG5E9Z4 385 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 HCRTO43612 131 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 CILPO75339 1184 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 NOL4O94818 638 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 PDGFRBP09619 1106 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 LAMP2P13473 410 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 PTPN1P18031 435 aaKnown RBP12.63□□□□□ -0.39
VPS52-213ENST00000461743 SP100P23497 879 aaPredicted RBP12.63□□□□□ -0.39
VPS52-213ENST00000461743 RAP1GAPP47736 663 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 MTMR3Q13615 1198 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 SLC5A9Q2M3M2 681 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 KLHL40Q2TBA0 621 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 MDH1BQ5I0G3 518 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 SASS6Q6UVJ0 657 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 NPAS3Q8IXF0 933 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 UBALD2Q8IYN6 164 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 CRYBG2Q8N1P7 616 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 FAM200AQ8TCP9 573 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 SEMA4DQ92854 862 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 FGF13Q92913 245 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 PCED1BQ96HM7 432 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 SPATA17Q96L03 361 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 GCNAQ96QF7 691 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 MED15Q96RN5 788 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 MYADMQ96S97 322 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 PI4K2AQ9BTU6 479 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 NT5C1AQ9BXI3 368 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 LRRC3Q9BY71 257 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 GPR88Q9GZN0 384 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 SDCBP2Q9H190 292 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 NME7Q9Y5B8 376 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 KMT2EQ8IZD2 1858 aa12.63□□□□□ -0.39
VPS52-213ENST00000461743 GTPBP10A4D1E9 387 aaKnown RBP12.62□□□□□ -0.39
VPS52-213ENST00000461743 ANHXE9PGG2 379 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 CYP2F1P24903 491 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 ANXA13P27216 316 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 NDST1P52848 882 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 CDH8P55286 799 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 NTHL1P78549 312 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 CYP27A1Q02318 531 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 KCNH2Q12809 1159 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 CUL2Q13617 745 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 HTR4Q13639 388 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 DNAJB7Q7Z6W7 309 aaPredicted RBP12.62□□□□□ -0.39
VPS52-213ENST00000461743 ENOX1Q8TC92 643 aaKnown RBP12.62□□□□□ -0.39
VPS52-213ENST00000461743 SMARCD1Q96GM5 515 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 C8orf48Q96LL4 319 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 FAM81BQ96LP2 452 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 MYRFLQ96LU7 910 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 NT5C1BQ96P26 610 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 DPEP3Q9H4B8 488 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 MUTYHQ9UIF7 546 aa12.62□□□□□ -0.39
VPS52-213ENST00000461743 ATP2C2O75185 946 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 SOAT2O75908 522 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 CEBPBP17676 345 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 DDX6P26196 483 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS52-213ENST00000461743 EEF1GP26641 437 aaKnown RBP12.61□□□□□ -0.39
VPS52-213ENST00000461743 WEE1P30291 646 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 GCNT1Q02742 428 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 TAF12Q16514 161 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 MAN2A1Q16706 1144 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 ARHGAP15Q53QZ3 475 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 FAM35AQ86V20 835 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 ITFG1Q8TB96 612 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 SHKBP1Q8TBC3 707 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 LPIN3Q9BQK8 851 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 C1QTNF1Q9BXJ1 281 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 DMAP1Q9NPF5 467 aaPredicted RBP12.61□□□□□ -0.39
VPS52-213ENST00000461743 RTN4Q9NQC3 1192 aaKnown RBP12.61□□□□□ -0.39
VPS52-213ENST00000461743 GCNT4Q9P109 453 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 TMEM63CQ9P1W3 806 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 DUSP12Q9UNI6 340 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 ZNF318Q5VUA4 2279 aa12.61□□□□□ -0.39
VPS52-213ENST00000461743 MOSPD3O75425 235 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 LETM1O95202 739 aaPredicted RBP12.6□□□□□ -0.39
VPS52-213ENST00000461743 MYL4P12829 197 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 HMGA1P17096 107 aaKnown RBP12.6□□□□□ -0.39
VPS52-213ENST00000461743 PFKLP17858 780 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 BDNFP23560 247 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 GRIK1P39086 918 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 CCR2P41597 374 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 MTIF2P46199 727 aaKnown RBP12.6□□□□□ -0.39
VPS52-213ENST00000461743 ZXDAP98168 799 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 TDGQ13569 410 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 CCDC142Q17RM4 750 aa12.6□□□□□ -0.39
VPS52-213ENST00000461743 ENOSF1Q7L5Y1 443 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms