RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 TSPAN16Q9UKR8 245 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 RCCD1A6NED2 376 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 PHF20L1A8MW92 1017 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 DCTN3O75935 186 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 ODC1P11926 461 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 CTCFP49711 727 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-205ENST00000439160 SEC24CP53992 1094 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 EPS8L1Q8TE68 723 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 BAP1Q92560 729 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 COL20A1Q9P218 1284 aa12.85□□□□□ -0.35
TCOF1-205ENST00000439160 TSR3Q9UJK0 312 aaKnown RBP12.85□□□□□ -0.35
TCOF1-205ENST00000439160 ABCC6O95255 1503 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 ROBO1Q9Y6N7 1651 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 LSM8O95777 96 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 BCAT1P54687 386 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 CAPSQ13938 189 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PCSK7Q16549 785 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 HYIQ5T013 277 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 KIAA0319LQ8IZA0 1049 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 GBP7Q8N8V2 638 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 LRRC37BQ96QE4 947 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PIDD1Q9HB75 910 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 GTSE1Q9NYZ3 720 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 HES2Q9Y543 173 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 AKR1A1P14550 325 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 TAC1P20366 129 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 ATICP31939 592 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 SLC8A1P32418 973 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 HSDL1Q3SXM5 330 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 MIB1Q86YT6 1006 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PCSK9Q8NBP7 692 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 TTC8Q8TAM2 541 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 CNPY3Q9BT09 278 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 BARX2Q9UMQ3 279 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 USP18Q9UMW8 372 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 APOBEC2Q9Y235 224 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 KPNA7A9QM74 516 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PYGMP11217 842 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 MAP3K7CLP57077 242 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 C1QBPQ07021 282 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 HIPK4Q8NE63 616 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PABPC3Q9H361 631 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 WDCPQ9H6R7 721 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PDGFCQ9NRA1 345 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 SENP1Q9P0U3 644 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 DIAPH2O60879 1101 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 ZNF200P98182 395 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 FASTKD1Q53R41 847 aaKnown RBP12.84□□□□□ -0.35
TCOF1-205ENST00000439160 C10orf120Q5SQS8 335 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 IQSEC1Q6DN90 963 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 ACTL9Q8TC94 416 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 CCT8L2Q96SF2 557 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 GANQ9H2C0 597 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PPME1Q9Y570 386 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 PCDHB7Q9Y5E2 793 aa12.84□□□□□ -0.35
TCOF1-205ENST00000439160 TMEM120BA0PK00 339 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 PPARGP37231 505 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ARFIP2P53365 341 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 FSCN1Q16658 493 aaKnown RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 CXCL17Q6UXB2 119 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 DLK2Q6UY11 383 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 NT5DC3Q86UY8 548 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 NDUFAF2Q8N183 169 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ASIC4Q96FT7 647 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ITGA11Q9UKX5 1188 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 MYPNQ86TC9 1320 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 E2F8A0AVK6 867 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 DPYSL4O14531 572 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 STIP1P31948 543 aaKnown RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ART3Q13508 389 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 MDH1BQ5I0G3 518 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 C11orf63Q6NUN7 778 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 PPIL6Q8IXY8 311 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 IPMKQ8NFU5 416 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.83□□□□□ -0.363e-8■□□□□ 10.1
TCOF1-205ENST00000439160 MDM1Q8TC05 714 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 GANCQ8TET4 914 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 SLITRK1Q96PX8 696 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 STARD7Q9NQZ5 370 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 KRT82Q9NSB4 513 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 PSMC3IPQ9P2W1 217 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 COL1A1P02452 1464 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 PJA2O43164 708 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 TNFSF9P41273 254 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 PSEN2P49810 448 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 IL31Q6EBC2 164 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 SPOCD1Q6ZMY3 1216 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 CHSY1Q86X52 802 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 EXD1Q8NHP7 514 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 BHMTQ93088 406 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ARL8AQ96BM9 186 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 FOXP3Q9BZS1 431 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 XPNPEP3Q9NQH7 507 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ZFP69BQ9UJL9 534 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 NFASCO94856 1347 aa12.83□□□□□ -0.36
TCOF1-205ENST00000439160 ZC3H4Q9UPT8 1303 aaKnown RBP12.83□□□□□ -0.36
TCOF1-205ENST00000439160 GOLGA8QA0A0J9YX86 632 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 GOLGA8OA6NCC3 632 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 GOLGA8NF8WBI6 632 aa12.82□□□□□ -0.36
TCOF1-205ENST00000439160 NEMP1O14524 444 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms