RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 KIF2BQ8N4N8 673 aa15.03■□□□□ -0
LIG1-202ENST00000427526 TMEM35BQ8NCS4 154 aa15.03■□□□□ -0
LIG1-202ENST00000427526 SLC35B2Q8TB61 432 aa15.03■□□□□ -0
LIG1-202ENST00000427526 COPS5Q92905 334 aa15.03■□□□□ -0
LIG1-202ENST00000427526 TMEM121Q9BTD3 319 aa15.03■□□□□ -0
LIG1-202ENST00000427526 IMPG2Q9BZV3 1241 aa15.03■□□□□ -0
LIG1-202ENST00000427526 TRABDQ9H4I3 376 aa15.03■□□□□ -0
LIG1-202ENST00000427526 KIF9Q9HAQ2 790 aa15.03■□□□□ -0
LIG1-202ENST00000427526 CISHQ9NSE2 258 aa15.03■□□□□ -0
LIG1-202ENST00000427526 DDX56Q9NY93 547 aaKnown RBP15.03■□□□□ -0
LIG1-202ENST00000427526 SHOC2Q9UQ13 582 aa15.03■□□□□ -0
LIG1-202ENST00000427526 DNAJC25-GNG10A0A024R161 153 aa15.03■□□□□ -0
LIG1-202ENST00000427526 POC1B-GALNT4F8VUJ3 575 aa15.03■□□□□ -0
LIG1-202ENST00000427526 EIF4BP23588 611 aaKnown RBP15.03■□□□□ -0
LIG1-202ENST00000427526 RFC5P40937 340 aa15.03■□□□□ -0
LIG1-202ENST00000427526 MYL6P60660 151 aa15.03■□□□□ -0
LIG1-202ENST00000427526 TAP1Q03518 808 aa15.03■□□□□ -0
LIG1-202ENST00000427526 DCUN1D2Q6PH85 259 aa15.03■□□□□ -0
LIG1-202ENST00000427526 FAM47EQ6ZV65 393 aa15.03■□□□□ -0
LIG1-202ENST00000427526 AGAP11Q8TF27 550 aa15.03■□□□□ -0
LIG1-202ENST00000427526 PRCCQ92733 491 aaPredicted RBP15.03■□□□□ -0
LIG1-202ENST00000427526 ACSF2Q96CM8 615 aaPredicted RBP15.03■□□□□ -0
LIG1-202ENST00000427526 PCDH9Q9HC56 1237 aa15.03■□□□□ -0
LIG1-202ENST00000427526 PCDHGC3Q9UN70 934 aa15.03■□□□□ -0
LIG1-202ENST00000427526 TRIM33Q9UPN9 1127 aa15.03■□□□□ -0
LIG1-202ENST00000427526 FARP1Q9Y4F1 1045 aaPredicted RBP15.03■□□□□ -0
LIG1-202ENST00000427526 A0A1B0GUA9 196 aa15.02■□□□□ -0
LIG1-202ENST00000427526 UNC5CO95185 931 aa15.02■□□□□ -0
LIG1-202ENST00000427526 ZBED8Q8IZ13 594 aa15.02■□□□□ -0
LIG1-202ENST00000427526 TFAP2BQ92481 460 aa15.02■□□□□ -0
LIG1-202ENST00000427526 NRBP2Q9NSY0 501 aa15.02■□□□□ -0
LIG1-202ENST00000427526 SENP1Q9P0U3 644 aa15.02■□□□□ -0
LIG1-202ENST00000427526 SMG5Q9UPR3 1016 aaKnown RBP15.02■□□□□ -0
LIG1-202ENST00000427526 TYROBPO43914 113 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 MSCO60682 206 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 HARSP12081 509 aaKnown RBP15.02□□□□□ -0.01
LIG1-202ENST00000427526 RPA3P35244 121 aaPredicted RBP15.02□□□□□ -0.01
LIG1-202ENST00000427526 DNAJC3Q13217 504 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 SNAPC2Q13487 334 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 SPARCL1Q14515 664 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 ACCSLQ4AC99 568 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 SPOCK2Q92563 424 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 HAUS1Q96CS2 278 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 PAIP2Q9BPZ3 127 aaKnown RBP15.02□□□□□ -0.01
LIG1-202ENST00000427526 MTMR12Q9C0I1 747 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 PPCSQ9HAB8 311 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 PDGFCQ9NRA1 345 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 SLC24A2Q9UI40 661 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 PHTF1Q9UMS5 762 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 L3MBTL1Q9Y468 752 aa15.02□□□□□ -0.01
LIG1-202ENST00000427526 LRRD1A4D1F6 860 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 YARSP54577 528 aaKnown RBP15.01□□□□□ -0.01
LIG1-202ENST00000427526 GPX6P59796 221 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 PDK4Q16654 411 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 ZNF394Q53GI3 561 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 CENPUQ71F23 418 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 POLNQ7Z5Q5 900 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 GIMAP7Q8NHV1 300 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 STAMBPL1Q96FJ0 436 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 GPR20Q99678 358 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 VPS37BQ9H9H4 285 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 EFR3BQ9Y2G0 817 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 ELF1P32519 619 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 MSH2P43246 934 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 PDIA2Q13087 525 aaKnown RBP15.01□□□□□ -0.01
LIG1-202ENST00000427526 SGSM1Q2NKQ1 1148 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 FAM160B1Q5W0V3 765 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 ARFGAP1Q8N6T3 406 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 SMC6Q96SB8 1091 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 NIF3L1Q9GZT8 377 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 A0A1W2PPM1 405 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 SGK1O00141 431 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 NDC80O14777 642 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 TOM1L1O75674 476 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 KRT15P19012 456 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 IBSPP21815 317 aaPredicted RBP15.01□□□□□ -0.01
LIG1-202ENST00000427526 SLC1A5Q15758 541 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 EFHC2Q5JST6 749 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 CELF3Q5SZQ8 465 aaKnown RBP15.01□□□□□ -0.01
LIG1-202ENST00000427526 CYP4A22Q5TCH4 519 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 ERICH1Q86X53 443 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 C4orf33Q8N1A6 199 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 SLCO1B3Q9NPD5 702 aa15.01□□□□□ -0.01
LIG1-202ENST00000427526 A8MUI8 341 aa15□□□□□ -0.01
LIG1-202ENST00000427526 NOP56O00567 594 aaKnown RBP15□□□□□ -0.01
LIG1-202ENST00000427526 EDF1O60869 148 aaKnown RBP15□□□□□ -0.01
LIG1-202ENST00000427526 MAFO75444 373 aaPredicted RBP15□□□□□ -0.01
LIG1-202ENST00000427526 ITGBL1O95965 494 aaPredicted RBP15□□□□□ -0.01
LIG1-202ENST00000427526 SLC25A11Q02978 314 aaKnown RBP15□□□□□ -0.01
LIG1-202ENST00000427526 PRPF31Q8WWY3 499 aaKnown RBP15□□□□□ -0.01
LIG1-202ENST00000427526 MYLK2Q9H1R3 596 aa15□□□□□ -0.01
LIG1-202ENST00000427526 MROH8Q9H579 483 aa15□□□□□ -0.01
LIG1-202ENST00000427526 SAE1Q9UBE0 346 aaPredicted RBP15□□□□□ -0.01
LIG1-202ENST00000427526 FETUBQ9UGM5 382 aa15□□□□□ -0.01
LIG1-202ENST00000427526 RABGEF1Q9UJ41 708 aa15□□□□□ -0.01
LIG1-202ENST00000427526 CLUHO75153 1309 aa15□□□□□ -0.01
LIG1-202ENST00000427526 ABLIM1O14639 778 aa15□□□□□ -0.01
LIG1-202ENST00000427526 WEE2P0C1S8 567 aa15□□□□□ -0.01
LIG1-202ENST00000427526 RFC1P35251 1148 aaPredicted RBP15□□□□□ -0.01
LIG1-202ENST00000427526 PLCB3Q01970 1234 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms