RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ERAL1O75616 437 aaKnown RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 PGM3O95394 542 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 EFEMP2O95967 443 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 TUBB4AP04350 444 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 EGR1P18146 543 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 RGS2P41220 211 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 DPP6P42658 865 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ACTR2P61160 394 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 VAMP2P63027 116 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 RAB39AQ14964 217 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 MST1LQ2TV78 715 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 DNTTIP2Q5QJE6 756 aaKnown RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 H1FNTQ75WM6 255 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 SLC44A2Q8IWA5 706 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 GALNT4Q8N4A0 578 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 REPS2Q8NFH8 660 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 CCDC94Q9BW85 323 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ITPAQ9BY32 194 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 RRAGCQ9HB90 399 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 TMOD4Q9NZQ9 345 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 HDAC5Q9UQL6 1122 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 MSH6P52701 1360 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 TECPR2O15040 1411 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 PRSS29PA6NIE9 313 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 CD1AP06126 327 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 DDCP20711 480 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ECHS1P30084 290 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 MLH1P40692 756 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 TNNT3P45378 269 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 OXCT1P55809 520 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ATP8B2P98198 1209 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 TBCCQ15814 346 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 PLBD1Q6P4A8 553 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ZDHHC24Q6UX98 284 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 Q6ZS46 218 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 GALNTL5Q7Z4T8 443 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 PQLC1Q8N2U9 271 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 CCDC150Q8NCX0 1101 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 PHOSPHO1Q8TCT1 267 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ZNF622Q969S3 477 aaKnown RBP eCLIP5.63□□□□□ -1.512e-8■□□□□ 10.5
VPS13A-207ENST00000419472 TRAPPC9Q96Q05 1148 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 GPATCH1Q9BRR8 931 aaKnown RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 RTKNQ9BST9 563 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 CEP41Q9BYV8 373 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 SEMA3GQ9NS98 782 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 DNAI1Q9UI46 699 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 NAALADL1Q9UQQ1 740 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 ZBED9Q6R2W3 1325 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 RPTORQ8N122 1335 aa5.63□□□□□ -1.51
VPS13A-207ENST00000419472 AHDC1Q5TGY3 1603 aaPredicted RBP5.63□□□□□ -1.51
VPS13A-207ENST00000419472 C19orf81C9J6K1 198 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 PCDH17O14917 1159 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 KIAA0355O15063 1070 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ROCK2O75116 1388 aaKnown RBP5.62□□□□□ -1.51
VPS13A-207ENST00000419472 PIK3C2GO75747 1445 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ENDOD1O94919 500 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 IGHDP01880 384 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 PRKCBP05771 671 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ALADP13716 330 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 NPPBP16860 134 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 HADHAP40939 763 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 GPR15P49685 360 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 PER3P56645 1201 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 BPIFB3P59826 476 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 NOMO3P69849 1222 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 PLIN5Q00G26 463 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 SOS1Q07889 1333 aaPredicted RBP5.62□□□□□ -1.51
VPS13A-207ENST00000419472 TMEM94Q12767 1356 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 SCAPQ12770 1279 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CDC42BPGQ6DT37 1551 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 BEND4Q6ZU67 534 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 TMTC3Q6ZXV5 915 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 RTL10Q7L3V2 364 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 RASGRP2Q7LDG7 609 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CCDC28AQ8IWP9 274 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ZFPM1Q8IX07 1006 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CARNMT1Q8N4J0 409 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 RAPGEF4Q8WZA2 1011 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 SNX27Q96L92 541 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 DLC1Q96QB1 1528 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ZNF518BQ9C0D4 1074 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ABHD16BQ9H3Z7 469 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CHODLQ9H9P2 273 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 KCND3Q9UK17 655 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CAMK2AQ9UQM7 478 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CYP46A1Q9Y6A2 500 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 ROBO1Q9Y6N7 1651 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CEP350Q5VT06 3117 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CCDC7Q96M83 1385 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 STX16-NPEPL1H3BU86 382 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 RAB27BO00194 218 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 STX16O14662 325 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 TGDSO95455 350 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 LY86O95711 162 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 CHMP24386 653 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 SREBF1P36956 1147 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 SLC6A11P48066 632 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 AARSP49588 968 aaKnown RBP eCLIP5.62□□□□□ -1.51
VPS13A-207ENST00000419472 RTP1P59025 263 aa5.62□□□□□ -1.51
VPS13A-207ENST00000419472 NLRP5P59047 1200 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms