RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 TMED2Q15363 201 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 SYCP2LQ5T4T6 812 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 IZUMO3Q5VZ72 239 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 EFCAB13Q8IY85 973 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 NOA1Q8NC60 698 aaKnown RBP9.54□□□□□ -0.88
LIG4-202ENST00000405925 STKLD1Q8NE28 680 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 SPATA18Q8TC71 538 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 BAP1Q92560 729 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 ZSWIM1Q9BR11 485 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 GOLGA2P5Q9HBQ8 144 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 GABRQQ9UN88 632 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 TLL2Q9Y6L7 1015 aa9.54□□□□□ -0.88
LIG4-202ENST00000405925 EEF2KO00418 725 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 PPP1R12AO14974 1030 aaPredicted RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 PFDN6O15212 129 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 KCNN4O15554 427 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 ASS1P00966 412 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 LRG1P02750 347 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 EPHB2P29323 1055 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 C1QBPQ07021 282 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 EPM2AIP1Q7L775 607 aaPredicted RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 FAM172AQ8WUF8 416 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 ENTPD7Q9NQZ7 604 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 CREBZFQ9NS37 354 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 TRMT13Q9NUP7 481 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 GPATCH2LQ9NWQ4 482 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 LSM7Q9UK45 103 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 PCDHB12Q9Y5F1 795 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 CNTNAP2Q9UHC6 1331 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 GOLGA8KD6RF30 607 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 RASGRF2O14827 1237 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 TSPAN1O60635 241 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 CRCPO75575 148 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 MICAL2O94851 1124 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 PAEPP09466 180 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 CCDC130P13994 396 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 IFNAR2P48551 515 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 VSNL1P62760 191 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 MCL1Q07820 350 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 ADIGQ0VDE8 80 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 DHX34Q14147 1143 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 SMAD1Q15797 465 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 NOMO2Q5JPE7 1267 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 TSHZ1Q6ZSZ6 1077 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 UBE2Q2Q8WVN8 375 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 RIN2Q8WYP3 895 aaPredicted RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 SEMA4DQ92854 862 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 BHMTQ93088 406 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 C18orf25Q96B23 403 aaPredicted RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 AGAP3Q96P47 875 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 NTPCRQ9BSD7 190 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 CNPY3Q9BT09 278 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 CYP4F11Q9HBI6 524 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 LRP5O75197 1615 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 RGS20O76081 388 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 GJB6O95452 261 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 GARSP41250 739 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 ACLYP53396 1101 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 PRMT2P55345 433 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 MARSP56192 900 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 RPL10AP62906 217 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 PABPC5Q96DU9 382 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 FTHL17Q9BXU8 183 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 PDZD7Q9H5P4 517 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 ZCCHC17Q9NP64 241 aaKnown RBP9.53□□□□□ -0.88
LIG4-202ENST00000405925 SMYD2Q9NRG4 433 aa9.53□□□□□ -0.88
LIG4-202ENST00000405925 RNF225M0QZC1 329 aaPredicted RBP9.52□□□□□ -0.88
LIG4-202ENST00000405925 PROSCO94903 275 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 AMHP03971 560 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 KRT10P13645 584 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 PRKCIP41743 596 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 MBTD1Q05BQ5 628 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 THOC5Q13769 683 aaKnown RBP9.52□□□□□ -0.88
LIG4-202ENST00000405925 ZNF235Q14590 738 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 ACCSLQ4AC99 568 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 WDR59Q6PJI9 974 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 RAPH1Q70E73 1250 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 SCUBE3Q8IX30 993 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 USP38Q8NB14 1042 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 ZSWIM2Q8NEG5 633 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 USP33Q8TEY7 942 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 EDEM1Q92611 657 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 SCYL1Q96KG9 808 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 EIF2AQ9BY44 585 aaKnown RBP9.52□□□□□ -0.88
LIG4-202ENST00000405925 ARHGAP39Q9C0H5 1083 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.52□□□□□ -0.884e-6■■■■■ 37.9
LIG4-202ENST00000405925 WDCPQ9H6R7 721 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.52□□□□□ -0.88
LIG4-202ENST00000405925 NAV1Q8NEY1 1877 aa9.52□□□□□ -0.88
LIG4-202ENST00000405925 MYH7P12883 1935 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 PHF2O75151 1096 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 STAMBPO95630 424 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 CKMP06732 381 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 MX2P20592 715 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 BDNFP23560 247 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 MTM1Q13496 603 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 BYSLQ13895 437 aaKnown RBP9.52□□□□□ -0.89
LIG4-202ENST00000405925 FYB2Q5VWT5 728 aa9.52□□□□□ -0.89
LIG4-202ENST00000405925 SLC13A5Q86YT5 568 aaPredicted RBP9.52□□□□□ -0.89
LIG4-202ENST00000405925 DDX60Q8IY21 1712 aaKnown RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms