RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C4orf50Q6ZRC1 276 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 GPR65Q8IYL9 337 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 MYLPFQ96A32 169 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 PCED1BQ96HM7 432 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 TCF25Q9BQ70 676 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 SYT11Q9BT88 431 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 KCNF1Q9H3M0 494 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 TLR9Q9NR96 1032 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 PCDHGC3Q9UN70 934 aa19.16■□□□□ 0.66
SDC1-203ENST00000403076 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.16■□□□□ 0.66
SDC1-203ENST00000403076 A0A087X0T9 212 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 H3BNC9 293 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 CLDN5O00501 218 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 GRM6O15303 877 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 TBC1D4O60343 1298 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 CFHP08603 1231 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 FAM228BP0C875 321 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 ERVFC1P60507 584 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 MTF1Q14872 753 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 PTPN14Q15678 1187 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 PLPP4Q5VZY2 271 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 RSPO2Q6UXX9 243 aaPredicted RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 RAD9BQ6WBX8 426 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 FUKQ8N0W3 1084 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 UBA3Q8TBC4 463 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 PCDHB18PQ96TA0 734 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 HNRNPABQ99729 332 aaKnown RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 B3GNT5Q9BYG0 378 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 SPTLC3Q9NUV7 552 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 TMLHEQ9NVH6 421 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 A0A1W2PPC1 479 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 FAM170AA1A519 330 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 TMCO5BA8MYB1 307 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 DDX3XO00571 662 aaKnown RBP eCLIP19.15■□□□□ 0.669e-8■■□□□ 13.7
SDC1-203ENST00000403076 SLC8A3P57103 927 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 GFPT1Q06210 699 aaPredicted RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 GPR17Q13304 367 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 SMC1AQ14683 1233 aaKnown RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 SPA17Q15506 151 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 CCDC122Q5T0U0 273 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 DENND1BQ6P3S1 775 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 TMEM35BQ8NCS4 154 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 PKMYT1Q99640 499 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 CLSTN3Q9BQT9 956 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 ABI2Q9NYB9 513 aaPredicted RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 COLQQ9Y215 455 aaPredicted RBP19.15■□□□□ 0.66
SDC1-203ENST00000403076 PCDHB5Q9Y5E4 795 aa19.15■□□□□ 0.66
SDC1-203ENST00000403076 ADAM12O43184 909 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 AP1G2O75843 785 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 NDUFA10O95299 355 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 DNAJB1P25685 340 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 SLC18A3Q16572 532 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 ASTE1Q2TB18 679 aaPredicted RBP19.14■□□□□ 0.65
SDC1-203ENST00000403076 SLC8B1Q6J4K2 584 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 ALKBH5Q6P6C2 394 aaKnown RBP19.14■□□□□ 0.65
SDC1-203ENST00000403076 FAM35AQ86V20 835 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 ANKRD52Q8NB46 1076 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 PGLYRP2Q96PD5 576 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 ZNF518BQ9C0D4 1074 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 NGRNQ9NPE2 291 aaKnown RBP19.14■□□□□ 0.65
SDC1-203ENST00000403076 KRT82Q9NSB4 513 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 FNIP2Q9P278 1114 aa19.14■□□□□ 0.65
SDC1-203ENST00000403076 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.14■□□□□ 0.65
SDC1-203ENST00000403076 LSM8O95777 96 aaKnown RBP19.13■□□□□ 0.65
SDC1-203ENST00000403076 FAM200BP0CF97 657 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 BDNFP23560 247 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 BCAT1P54687 386 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 ROR1Q01973 937 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 SMARCB1Q12824 385 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 CLEC16AQ2KHT3 1053 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 NAA35Q5VZE5 725 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 TTC30AQ86WT1 665 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 PALB2Q86YC2 1186 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 C1orf131Q8NDD1 294 aaKnown RBP19.13■□□□□ 0.65
SDC1-203ENST00000403076 SLC30A5Q8TAD4 765 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 CPA5Q8WXQ8 436 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 SMARCD1Q96GM5 515 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 EMILIN2Q9BXX0 1053 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 LHX5Q9H2C1 402 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 RXFP1Q9HBX9 757 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 PLXNA4Q9HCM2 1894 aa19.13■□□□□ 0.65
SDC1-203ENST00000403076 EIF3CLB5ME19 914 aaKnown RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 TEX28O15482 410 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 LILRB3O75022 631 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 CYP1A1P04798 512 aaPredicted RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 NSFP46459 744 aaKnown RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 NDUFV1P49821 464 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 BST2Q10589 180 aaKnown RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 HS1BP3Q53T59 392 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 RNF19BQ6ZMZ0 732 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 PAQR9Q6ZVX9 377 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 ATAD1Q8NBU5 361 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 SPPL2BQ8TCT7 592 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 SECISBP2LQ93073 1101 aaKnown RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 NOX5Q96PH1 765 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 EIF3CQ99613 913 aaKnown RBP19.12■□□□□ 0.65
SDC1-203ENST00000403076 DUSP16Q9BY84 665 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 RHOBTB2Q9BYZ6 727 aa19.12■□□□□ 0.65
SDC1-203ENST00000403076 LUC7LQ9NQ29 371 aaKnown RBP19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms