RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 CPT1AP50416 773 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 DNA2P51530 1060 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 GALCP54803 685 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 UBXN2AP68543 259 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TNFAIP8L3Q5GJ75 292 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TRIM68Q6AZZ1 485 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 ANO7Q6IWH7 933 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 NOP9Q86U38 636 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 SYCP3Q8IZU3 236 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 MAIP1Q8WWC4 291 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 NAF1Q96HR8 494 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 SPATA33Q96N06 139 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 EPAS1Q99814 870 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 C11orf84Q9BUA3 381 aaPredicted RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 INO80BQ9C086 356 aaPredicted RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 NEUROG2Q9H2A3 272 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 ADAM7Q9H2U9 754 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 GPRC5CQ9NQ84 441 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 WDR35Q9P2L0 1181 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TELO2Q9Y4R8 837 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TSPAN1O60635 241 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TXNP10599 105 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 ACTN1P12814 892 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 MMP13P45452 471 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 LIG4P49917 911 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 APLP1P51693 650 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TNNC1P63316 161 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 NOMO3P69849 1222 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 VAC14Q08AM6 782 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 BNIP1Q12981 228 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 KLF1Q13351 362 aaPredicted RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 ENOX2Q16206 610 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 RGMBQ6NW40 437 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TAF2Q6P1X5 1199 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 TMC3Q7Z5M5 1100 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 NCAPG2Q86XI2 1143 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 PSTKQ8IV42 348 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 KLHDC8BQ8IXV7 354 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 RAVER1Q8IY67 606 aaKnown RBP5.66□□□□□ -1.5
VPS41-203ENST00000395969 KATNAL2Q8IYT4 538 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 KIAA0319LQ8IZA0 1049 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 PXYLP1Q8TE99 480 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 SNX27Q96L92 541 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 CEP295NLQ96MC4 621 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 PCDHB18PQ96TA0 734 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 NIF3L1Q9GZT8 377 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 LMCD1Q9NZU5 365 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 ADAM22Q9P0K1 906 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 UMODL1Q5DID0 1318 aa5.66□□□□□ -1.5
VPS41-203ENST00000395969 GOLGA6L10A0A0M3HER8 536 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 E7ENQ6 273 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 CLIC2O15247 247 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ZNF623O75123 536 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 TCEA3O75764 348 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 CABYRO75952 493 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 HMGCRP04035 888 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 PRKCBP05771 671 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 CRYBB1P53674 252 aaPredicted RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 EIF3BP55884 814 aaKnown RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 NLRP11P59045 1033 aaKnown RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 MRPS35P82673 323 aaKnown RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 LY6KQ17RY6 165 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 DUOXA2Q1HG44 320 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ODF2Q5BJF6 829 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 MAMSTRQ6ZN01 415 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 SPATA21Q7Z572 469 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 SDCCAG8Q86SQ7 713 aaPredicted RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 MCOLN2Q8IZK6 566 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 NPLOC4Q8TAT6 608 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 TAS1R2Q8TE23 839 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 PRCCQ92733 491 aaPredicted RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 IFT43Q96FT9 208 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 GORASP1Q9BQQ3 440 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 CDT1Q9H211 546 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 APOBEC3GQ9HC16 384 aaKnown RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 LRRC4CQ9HCJ2 640 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ABCF3Q9NUQ8 709 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 RBAKQ9NYW8 714 aaPredicted RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 SCINQ9Y6U3 715 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 SF3B1O75533 1304 aaKnown RBP eCLIP5.65□□□□□ -1.51e-8■■■■■ 51.8
VPS41-203ENST00000395969 SFI1A8K8P3 1242 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 SMAPO00193 183 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 IGF2BP3O00425 579 aaKnown RBP eCLIP5.65□□□□□ -1.5
VPS41-203ENST00000395969 PIRO00625 290 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 HLA-DRAP01903 254 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 KRT16P08779 473 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 IMPDH2P12268 514 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ALDH3A1P30838 453 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 HOXA11P31270 313 aaPredicted RBP5.65□□□□□ -1.5
VPS41-203ENST00000395969 FLT3P36888 993 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 MSH2P43246 934 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 DSC3Q14574 896 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 TMEM164Q5U3C3 297 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ATF7IP2Q5U623 682 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 NUGGCQ68CJ6 796 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ARHGAP22Q7Z5H3 698 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 GLYCTKQ8IVS8 523 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 MDM1Q8TC05 714 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 BICD1Q96G01 975 aa5.65□□□□□ -1.5
VPS41-203ENST00000395969 ZSWIM1Q9BR11 485 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms