RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 FAM107BQ9H098 131 aa13.2□□□□□ -0.3
VRK3-202ENST00000377011 TOPORSQ9NS56 1045 aaPredicted RBP13.2□□□□□ -0.3
VRK3-202ENST00000377011 SEL1LQ9UBV2 794 aa13.2□□□□□ -0.3
VRK3-202ENST00000377011 KCNG1Q9UIX4 513 aa13.2□□□□□ -0.3
VRK3-202ENST00000377011 AGO2Q9UKV8 859 aaKnown RBP13.2□□□□□ -0.3
VRK3-202ENST00000377011 USP15Q9Y4E8 981 aaPredicted RBP13.2□□□□□ -0.3
VRK3-202ENST00000377011 GTPBP10A4D1E9 387 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 MYO1CO00159 1063 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 GFPT2O94808 682 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 MYBL2P10244 700 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 SP100P23497 879 aaPredicted RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 RPL13P26373 211 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 PRKCIP41743 596 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 CDR1P51861 262 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 POLR2FP61218 127 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 KLHL30Q0D2K2 578 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 PTPRJQ12913 1337 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 ADAM9Q13443 819 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 NFIL3Q16649 462 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 KNOP1Q1ED39 458 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 MEI1Q5TIA1 1274 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 FAM76AQ8TAV0 307 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 POMGNT1Q8WZA1 660 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 ACCSQ96QU6 501 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 CLSTN3Q9BQT9 956 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 FAM213AQ9BRX8 229 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 RXFP1Q9HBX9 757 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 MRPL17Q9NRX2 175 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 RRP15Q9Y3B9 282 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 AGPSO00116 658 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 SPTLC1O15269 473 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 AFPP02771 609 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 URODP06132 367 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 FGFR3P22607 806 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 NR2F2P24468 414 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 KLRC2P26717 231 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 GGCXP38435 758 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 KCNH2Q12809 1159 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 SMAD2Q15796 467 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 USP41Q3LFD5 358 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 DCLRE1AQ6PJP8 1040 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 FMNL3Q8IVF7 1028 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 MREGQ8N565 214 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 CDCA3Q99618 268 aaPredicted RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 RPF1Q9H9Y2 349 aaKnown RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 NLRC4Q9NPP4 1024 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 GDF3Q9NR23 364 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 ARMCX3Q9UH62 379 aaPredicted RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 SALL4Q9UJQ4 1053 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 INTUQ9ULD6 942 aa13.19□□□□□ -0.3
VRK3-202ENST00000377011 TIMM13Q9Y5L4 95 aaPredicted RBP13.19□□□□□ -0.3
VRK3-202ENST00000377011 SF3B1O75533 1304 aaKnown RBP eCLIP13.18□□□□□ -0.33e-6■■■■■ 137.9
VRK3-202ENST00000377011 UBE4BO95155 1302 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 MTCL1Q9Y4B5 1905 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 TMEM189-UBE2V1I3L0A0 370 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 CLIC2O15247 247 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 NCK2O43639 380 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 RFPL2O75678 378 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 ZP2Q05996 745 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 SMAD4Q13485 552 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 RAPGEF1Q13905 1077 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 AAK1Q2M2I8 961 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 RARS2Q5T160 578 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 LMBRD2Q68DH5 695 aaPredicted RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 TMC5Q6UXY8 1006 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 SND1Q7KZF4 910 aaKnown RBP eCLIP13.18□□□□□ -0.3
VRK3-202ENST00000377011 C1orf131Q8NDD1 294 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 SUSD6Q92537 303 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 PPP2R3CQ969Q6 453 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 HVCN1Q96D96 273 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 DDX27Q96GQ7 796 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 DMGDHQ9UI17 866 aaKnown RBP13.18□□□□□ -0.3
VRK3-202ENST00000377011 PCDHB13Q9Y5F0 798 aa13.18□□□□□ -0.3
VRK3-202ENST00000377011 WDFY4Q6ZS81 3184 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 A0A0A6YYK5 440 aaPredicted RBP13.17□□□□□ -0.3
VRK3-202ENST00000377011 GOLGA6CA6NDK9 693 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 TULP1O00294 542 aaPredicted RBP13.17□□□□□ -0.3
VRK3-202ENST00000377011 EIF3DO15371 548 aaKnown RBP eCLIP13.17□□□□□ -0.3
VRK3-202ENST00000377011 TGM5O43548 720 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 HSF2BPO75031 334 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 PALMO75781 387 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 GOLGA6DP0CG33 693 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 TNNC1P63316 161 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 LILRA6Q6PI73 481 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 LRRC31Q6UY01 552 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 APBB1IPQ7Z5R6 666 aaPredicted RBP13.17□□□□□ -0.3
VRK3-202ENST00000377011 CBWD2Q8IUF1 395 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 SYCP3Q8IZU3 236 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 PBKQ96KB5 322 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 TTPALQ9BTX7 342 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 PLEKHA5Q9HAU0 1116 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 GOLGA6AQ9NYA3 693 aa13.17□□□□□ -0.3
VRK3-202ENST00000377011 PHACTR2O75167 634 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 ZMYND10O75800 440 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 LRPAP1P30533 357 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 NAP1L1P55209 391 aaKnown RBP13.16□□□□□ -0.3
VRK3-202ENST00000377011 PSMD5Q16401 504 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 KIAA1841Q6NSI8 718 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 DPY19L2P1Q6NXN4 242 aa13.16□□□□□ -0.3
VRK3-202ENST00000377011 VPS36Q86VN1 386 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms