RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 RPL21P46778 160 aaKnown RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 FNTAP49354 379 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 PMS2P54278 862 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 LIN9Q5TKA1 542 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 TRIM72Q6ZMU5 477 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 PHLDB2Q86SQ0 1253 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 IFNLR1Q8IU57 520 aaPredicted RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 CYFIP2Q96F07 1278 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 CPB2Q96IY4 423 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 FTHL17Q9BXU8 183 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 APOBEC3GQ9HC16 384 aaKnown RBP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 GRHL1Q9NZI5 618 aa16.44■□□□□ 0.22
CCDC40-202ENST00000374876 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.44■□□□□ 0.22
CCDC40-202ENST00000374876 TTLL13PA6NNM8 815 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 MYO1CO00159 1063 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 NDUFAB1O14561 156 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 B4GALT5O43286 388 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 CLTAP09496 248 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 ATP2A2P16615 1042 aaKnown RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 GNA15P30679 374 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 NOP14P78316 857 aaKnown RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 CDCA2Q69YH5 1023 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 ZBTB8OSQ8IWT0 167 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 C12orf50Q8NA57 414 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 NFKBIZQ9BYH8 718 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 PABPC3Q9H361 631 aaKnown RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 PIN4Q9Y237 131 aaKnown RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 MICAL3Q7RTP6 2002 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 ECEL1O95672 775 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 EDN1P05305 212 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 HOXA11P31270 313 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 EFNA5P52803 228 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 RABGGTBP53611 331 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 NCOA4Q13772 614 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 DSC3Q14574 896 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 SIX1Q15475 284 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 SEZ6Q53EL9 994 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 SGO2Q562F6 1265 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 DENND2CQ68D51 928 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 ZPBP2Q6X784 338 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 MON1BQ7L1V2 547 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 CDR2LQ86X02 465 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 PASD1Q8IV76 773 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 OR5B17Q8NGF7 314 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 TCHPQ9BT92 498 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 IMPG2Q9BZV3 1241 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 TRIM7Q9C029 511 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 TSPYL2Q9H2G4 693 aaPredicted RBP16.43■□□□□ 0.22
CCDC40-202ENST00000374876 LRRC19Q9H756 370 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 CNTNAP2Q9UHC6 1331 aa16.43■□□□□ 0.22
CCDC40-202ENST00000374876 FSCN2O14926 492 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 EFCAB14O75071 495 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 AMHP03971 560 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 KCNJ1P48048 391 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 LLGL1Q15334 1064 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 PPP1R7Q15435 360 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 AMHR2Q16671 573 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 C2CD6Q53TS8 623 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 HOOK3Q86VS8 718 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 RBBP8NLQ8NC74 664 aaPredicted RBP16.42■□□□□ 0.22
CCDC40-202ENST00000374876 C2orf40Q9H1Z8 148 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 EPN3Q9H201 632 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 FZD8Q9H461 694 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 RGS18Q9NS28 235 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 ADAM22Q9P0K1 906 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 NOVA2Q9UNW9 492 aaKnown RBP16.42■□□□□ 0.22
CCDC40-202ENST00000374876 NUB1Q9Y5A7 615 aa16.42■□□□□ 0.22
CCDC40-202ENST00000374876 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 A0A1W2PPC1 479 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 TSPAN1O60635 241 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 AP3M2P53677 418 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 MAIP1Q8WWC4 291 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 C11orf70Q9BRQ4 267 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 MRPL4Q9BYD3 311 aaKnown RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 CCDC113Q9H0I3 377 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 MRPL47Q9HD33 250 aaKnown RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 THAP12O43422 761 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 PROSCO94903 275 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 PRKCBP05771 671 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 NUDT17P0C025 328 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 MYOGP15173 224 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 ARF4P18085 180 aaPredicted RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 PBX2P40425 430 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 NOMO3P69849 1222 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 MAPK6Q16659 721 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 TWF2Q6IBS0 349 aaKnown RBP16.41■□□□□ 0.22
CCDC40-202ENST00000374876 PPP1R2P3Q6NXS1 205 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 LLGL2Q6P1M3 1020 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 ZBTB33Q86T24 672 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 BRSK2Q8IWQ3 736 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 C1orf54Q8WWF1 131 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 TOP1MTQ969P6 601 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 VCPIP1Q96JH7 1222 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 FAM107BQ9H098 131 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 CHST12Q9NRB3 414 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 PTPRSQ13332 1948 aa16.41■□□□□ 0.22
CCDC40-202ENST00000374876 C9IYK1 514 aa16.4■□□□□ 0.22
CCDC40-202ENST00000374876 SOX1O00570 391 aaPredicted RBP16.4■□□□□ 0.22
CCDC40-202ENST00000374876 TOM1L1O75674 476 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms