RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 BPIFA3Q9BQP9 254 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 NACAP1Q9BZK3 213 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 RNF41Q9H4P4 317 aaPredicted RBP5.43□□□□□ -1.54
USP48-202ENST00000374730 SLITRK6Q9H5Y7 841 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 ARMT1Q9H993 441 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 GNL3LQ9NVN8 582 aaKnown RBP5.43□□□□□ -1.54
USP48-202ENST00000374730 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.43□□□□□ -1.54
USP48-202ENST00000374730 ANAPC4Q9UJX5 808 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 COL4A3BPQ9Y5P4 624 aa5.43□□□□□ -1.54
USP48-202ENST00000374730 KLRG2A4D1S0 409 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 CCDC69A6NI79 296 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 GOLGA6L19H0YKK7 550 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 RANBP6O60518 1105 aaKnown RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 DNAJC6O75061 913 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 MFAP3LO75121 409 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 FKBP9O95302 570 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 ADH4P08319 380 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 CMA1P23946 247 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 U2AF2P26368 475 aaKnown RBP eCLIP5.42□□□□□ -1.542e-6■□□□□ 10.5
USP48-202ENST00000374730 IARSP41252 1262 aaKnown RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 TDO2P48775 406 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NT5C2P49902 561 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 IL2P60568 153 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 SLC39A14Q15043 492 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 PPP2R5BQ15173 497 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 VPS72Q15906 364 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NAIF1Q69YI7 327 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 SYNE3Q6ZMZ3 975 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 MFSD6Q6ZSS7 791 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 C11orf57Q6ZUT1 292 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 FKBP9P1Q75LS8 142 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 CXorf67Q86X51 503 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 MICU3Q86XE3 530 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 ANKRD18AQ8IVF6 992 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 CEP57L1Q8IYX8 460 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 TMTC2Q8N394 836 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 LCORLQ8N3X6 602 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 GPR87Q9BY21 358 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 TRIM8Q9BZR9 551 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NYXQ9GZU5 481 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NAT10Q9H0A0 1025 aaKnown RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 ENKD1Q9H0I2 346 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 TTC12Q9H892 705 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 SPC25Q9HBM1 224 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 PCDH12Q9NPG4 1184 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NCDNQ9UBB6 729 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 HPSEQ9Y251 543 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 CLIC4Q9Y696 253 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 NUMBLQ9Y6R0 609 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 SLC4A4Q9Y6R1 1079 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 MORC2Q9Y6X9 1032 aaPredicted RBP5.42□□□□□ -1.54
USP48-202ENST00000374730 UBR3Q6ZT12 1888 aa5.42□□□□□ -1.54
USP48-202ENST00000374730 LRRC37AA6NMS7 1700 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 DDX60LQ5H9U9 1706 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 A0A087X0B3 334 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 CCDC196A0A1B0GTZ2 297 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 SNAP23O00161 211 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 DYNC1I1O14576 645 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 IFIT3O14879 490 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 RRP9O43818 475 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 NEMFO60524 1076 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 ALDH1A2O94788 518 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 DEXIO95424 95 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 LY86O95711 162 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 XPAP23025 273 aaPredicted RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 NDUFA8P51970 172 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 MANFP55145 182 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 WNT3AP56704 352 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 NRG3P56975 720 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 RBM6P78332 1123 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 DPTQ07507 201 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 PPARAQ07869 468 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 TRIM29Q14134 588 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 WTAPQ15007 396 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 PTPAQ15257 358 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 C1QL3Q5VWW1 255 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 OTUD7BQ6GQQ9 843 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 FRMD7Q6ZUT3 714 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 RAB11FIP4Q86YS3 637 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 CERS3Q8IU89 383 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 DHX40Q8IX18 779 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 ELOA2Q8IYF1 753 aaPredicted RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 ATXN2LQ8WWM7 1075 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 GAB3Q8WWW8 586 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 ST8SIA2Q92186 375 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 ZNF830Q96NB3 372 aaPredicted RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 MAP3K14Q99558 947 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 MNTQ99583 582 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 PDCD2LQ9BRP1 358 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 RIOK1Q9BRS2 568 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 BRIP1Q9BX63 1249 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 TRIM5Q9C035 493 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 EMC7Q9NPA0 242 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 TYW1Q9NV66 732 aaKnown RBP5.41□□□□□ -1.54
USP48-202ENST00000374730 ING3Q9NXR8 418 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 NARFQ9UHQ1 456 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 MAPRE3Q9UPY8 281 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 PPP2R3BQ9Y5P8 575 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 MROH7-TTC4A0A0A0MT08 1334 aa5.41□□□□□ -1.54
USP48-202ENST00000374730 XDHP47989 1333 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms