RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 ERVK-10P10266 1014 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 ZNF157P51786 506 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 TBC1D10CQ8IV04 446 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 C10orf53Q8N6V4 93 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 SYN2Q92777 582 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 ATXN7L3BQ96GX2 97 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 ATP1A3P13637 1013 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 STARD3Q14849 445 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 DHX40Q8IX18 779 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 PABPC5Q96DU9 382 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 TMA16Q96EY4 203 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 GJD4Q96KN9 370 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 AFF2P51816 1311 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 SLC20A1Q8WUM9 679 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 MCEEQ96PE7 176 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 DNAJC5BQ9UF47 199 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 AMACRQ9UHK6 382 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 YWHAQP27348 245 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 SHROOM1Q2M3G4 852 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 ZRANB3Q5FWF4 1079 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 COPS7BQ9H9Q2 264 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 AKAP7Q9P0M2 348 aaPredicted RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 TRPM1Q7Z4N2 1603 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 STIP1P31948 543 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 EPHB3P54753 998 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 CHRNB3Q05901 458 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 NIF3L1Q9GZT8 377 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 SCUBE2Q9NQ36 999 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 LIMA1Q9UHB6 759 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 SDR42E2A6NKP2 422 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 IGF2BP3O00425 579 aaKnown RBP eCLIP10.05□□□□□ -0.8
CUX1-203ENST00000360264 AIM2O14862 343 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 C1DQ13901 141 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 STX5Q13190 355 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 KPNB1Q14974 876 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 MICU2Q8IYU8 434 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 DDI1Q8WTU0 396 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 MLXIPLQ9NP71 852 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 PDP2Q9P2J9 529 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 PLA2G4CQ9UP65 541 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 CHN1P15882 459 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 TMEM237Q96Q45 408 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 PCMTD2Q9NV79 361 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 NDUFB5O43674 189 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 CCND1P24385 295 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 GSTA3Q16772 222 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 WDR41Q9HAD4 459 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 TSR3Q9UJK0 312 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 CENPCQ03188 943 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 CYP4F11Q9HBI6 524 aa10.05□□□□□ -0.8
CUX1-203ENST00000360264 SPTBN1Q01082 2364 aaKnown RBP10.05□□□□□ -0.8
CUX1-203ENST00000360264 SERPINB1P30740 379 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 KIZQ2M2Z5 673 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 ITIH5Q86UX2 942 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 CHSY1Q86X52 802 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 RIT2Q99578 217 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 CCDC3Q9BQI4 270 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 WDCPQ9H6R7 721 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 BATF3Q9NR55 127 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 AKAP10O43572 662 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 KRT75O95678 551 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 FAM83EQ2M2I3 478 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 GNASQ5JWF2 1037 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 OSBPL8Q9BZF1 889 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 PCDHB12Q9Y5F1 795 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 FBXO21O94952 628 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 OSBPL6Q9BZF3 934 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 HEATR1Q9H583 2144 aaKnown RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 F5H423 210 aaPredicted RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 SPATA21Q7Z572 469 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 NAT9Q9BTE0 207 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 VWA5AO00534 786 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 NCAM2O15394 837 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 PSMD7P51665 324 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 TOB2Q14106 344 aaPredicted RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 EPN3Q9H201 632 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 CACNA2D2Q9NY47 1150 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 SNX12Q9UMY4 172 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 ITGALP20701 1170 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 RAB14P61106 215 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 DPYDQ12882 1025 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 AGBL2Q5U5Z8 902 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 ICE2Q659A1 982 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 HPDLQ96IR7 371 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 ACADMP11310 421 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 PAIP2BQ9ULR5 123 aaKnown RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 SAC3D1A6NKF1 404 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 APLFQ8IW19 511 aaPredicted RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 C7orf25Q9BPX7 421 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 DDX47Q9H0S4 455 aaKnown RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 SPON1Q9HCB6 807 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 RAD18Q9NS91 495 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 KIAA1257Q9ULG3 409 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 TEX28O15482 410 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 DYNC1LI2O43237 492 aaPredicted RBP10.04□□□□□ -0.8
CUX1-203ENST00000360264 GPAT2Q6NUI2 795 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 SPATA4Q8NEY3 305 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 GNG14A0A1W2PPG7 69 aa10.04□□□□□ -0.8
CUX1-203ENST00000360264 TM9SF1O15321 606 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms