RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 FBF1Q8TES7 1133 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 SYN2Q92777 582 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 RPGRIP1Q96KN7 1286 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 GBP5Q96PP8 586 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 POP1Q99575 1024 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 SEZ6LQ9BYH1 1024 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 CELF4Q9BZC1 486 aaKnown RBP10.67□□□□□ -0.7
SYNE1-203ENST00000354674 PLAGL2Q9UPG8 496 aa10.67□□□□□ -0.7
SYNE1-203ENST00000354674 A0A1W2PQ45 241 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 A0A1W2PQY0 241 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 NDUFB5O43674 189 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ENTPD5O75356 428 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 RARAP10276 462 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ACTN1P12814 892 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 NAT1P18440 290 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 GCLMP48507 274 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 PTK7Q13308 1070 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 KRT39Q6A163 491 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 DTX3LQ8TDB6 740 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 CPB2Q96IY4 423 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 CGRRF1Q99675 332 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 SENP6Q9GZR1 1112 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 INTS2Q9H0H0 1204 aaKnown RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ETNK1Q9HBU6 452 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 SALL4Q9UJQ4 1053 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 OGDHLQ9ULD0 1010 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ANK1P16157 1881 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 CEP350Q5VT06 3117 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 LSM1O15116 133 aaKnown RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 RAD51CO43502 376 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 C4BPAP04003 597 aaKnown RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 UCHL3P15374 230 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 JAM2P57087 298 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF268Q14587 947 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 FAM26DQ5JW98 314 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 PDXDC1Q6P996 788 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ARHGAP18Q8N392 663 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 MMGT1Q8N4V1 131 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 CCDC127Q96BQ5 260 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 TCHPQ9BT92 498 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 IQCGQ9H095 443 aaKnown RBP10.66□□□□□ -0.7
SYNE1-203ENST00000354674 NEUROG2Q9H2A3 272 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 NLRC4Q9NPP4 1024 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 ATP8A1Q9Y2Q0 1164 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 TRPV2Q9Y5S1 764 aa10.66□□□□□ -0.7
SYNE1-203ENST00000354674 DYTNA2CJ06 578 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 MAGEA13PA6NCF6 341 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 TACC1O75410 805 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CHRNA1P02708 482 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 MXI1P50539 228 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 SPA17Q15506 151 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 SURF1Q15526 300 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 UAP1Q16222 522 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 DCAF4L1Q3SXM0 396 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ZACNQ401N2 412 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF449Q6P9G9 518 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 SV2AQ7L0J3 742 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 RSPH3Q86UC2 560 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CTNNBL1Q8WYA6 563 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 DHX38Q92620 1227 aaKnown RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CCDC42Q96M95 316 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 GLT1D1Q96MS3 346 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 NUDCD1Q96RS6 583 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 TOPORSQ9NS56 1045 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 PTPRJQ12913 1337 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 DNAH12Q6ZR08 3092 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ZNF263O14978 683 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 B4GALT4O60513 344 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 HSPA8P11142 646 aaKnown RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 FGFR4P22455 802 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 RFX1P22670 979 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 AP3M2P53677 418 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ARID5AQ03989 594 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CETN1Q12798 172 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CBX3Q13185 183 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ZRSR2Q15696 482 aaKnown RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 SLC9C1Q4G0N8 1177 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 SEZ6Q53EL9 994 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 LCA5Q86VQ0 697 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 WDR49Q8IV35 697 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CCHCR1Q8TD31 782 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 WHAMMQ8TF30 809 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CAVIN3Q969G5 261 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 IFIH1Q9BYX4 1025 aaKnown RBP10.65□□□□□ -0.7
SYNE1-203ENST00000354674 FGFR1OP2Q9NVK5 253 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 ARHGEF38Q9NXL2 777 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 AIPL1Q9NZN9 384 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CDY2AQ9Y6F7 541 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 BRCA2P51587 3418 aa10.65□□□□□ -0.7
SYNE1-203ENST00000354674 CDK7P50613 346 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 CACNA2D1P54289 1103 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 POLR2FP61218 127 aaKnown RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 MTFR1Q15390 333 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 FAM47CQ5HY64 1035 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 SLC27A1Q6PCB7 646 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 CATSPER4Q7RTX7 472 aa10.65□□□□□ -0.71
SYNE1-203ENST00000354674 CDR2LQ86X02 465 aaPredicted RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 RNF10Q8N5U6 811 aaKnown RBP10.65□□□□□ -0.71
SYNE1-203ENST00000354674 GDAP1Q8TB36 358 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms